Wall clock time and date at job start Mon Mar 30 2020 02:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.36686 * 2 1 4 4 C 1.54251 * 110.32450 * 237.81530 * 2 1 3 5 5 C 1.54375 * 105.06180 * 241.10365 * 4 2 1 6 6 N 1.48561 * 104.59370 * 336.14820 * 5 4 2 7 7 C 1.48562 * 104.22091 * 39.48254 * 6 5 4 8 8 H 1.08997 * 110.40861 * 79.41807 * 7 6 5 9 9 C 1.52996 * 110.40977 * 201.73760 * 7 6 5 10 10 C 1.50702 * 109.47159 * 293.54498 * 9 7 6 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 7 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 H 1.09000 * 109.47585 * 297.82166 * 1 2 3 19 19 H 1.08999 * 109.47377 * 57.82326 * 1 2 3 20 20 H 1.09003 * 109.46940 * 177.82228 * 1 2 3 21 21 H 1.09004 * 110.32574 * 122.20721 * 4 2 1 22 22 H 1.08997 * 110.41186 * 0.04642 * 4 2 1 23 23 H 1.09006 * 110.41430 * 217.37028 * 5 4 2 24 24 H 1.08997 * 110.51409 * 94.97367 * 5 4 2 25 25 H 1.00902 * 111.00342 * 159.03946 * 6 5 4 26 26 H 1.09004 * 109.47066 * 173.54701 * 9 7 6 27 27 H 1.08994 * 109.47405 * 53.54531 * 9 7 6 28 28 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0658 -0.7705 -1.2242 5 6 2.8806 -1.9421 -0.6356 6 7 3.2693 -1.4827 0.7226 7 6 2.0661 -0.7709 1.2253 8 1 1.3237 -1.4846 1.5824 9 6 2.4495 0.2021 2.3421 10 6 2.9319 -0.5737 3.5407 11 1 2.9623 -1.6528 3.5089 12 6 3.3402 0.0944 4.6756 13 7 3.3035 1.4085 4.7141 14 14 3.9453 -0.8670 6.1584 15 1 5.1289 -1.6772 5.7738 16 1 4.3220 0.0776 7.2406 17 1 2.8656 -1.7657 6.6401 18 1 -0.3634 0.4796 0.9088 19 1 -0.3634 0.5472 -0.8698 20 1 -0.3633 -1.0270 -0.0391 21 1 2.7082 -0.1268 -1.8252 22 1 1.2399 -1.1486 -1.8266 23 1 3.7671 -2.1308 -1.2413 24 1 2.2665 -2.8404 -0.5718 25 1 3.5011 -2.2649 1.3164 26 1 1.5795 0.7969 2.6204 27 1 3.2438 0.8616 1.9926 28 1 3.5904 1.8785 5.5127 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259946398.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:18 Heat of formation + Delta-G solvation = -39.856009 kcal Electronic energy + Delta-G solvation = -9901.875386 eV Core-core repulsion = 8143.872942 eV Total energy + Delta-G solvation = -1758.002444 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.72621 -35.13518 -32.92802 -31.98395 -28.45982 -26.49962 -24.00994 -21.76238 -20.53043 -18.35565 -17.02451 -16.68840 -15.93771 -15.27644 -14.45557 -13.99949 -13.91765 -13.24096 -13.11056 -12.98572 -12.66731 -12.58577 -12.25956 -12.11615 -11.59066 -11.43696 -11.24549 -10.84241 -10.53678 -9.27838 -8.15452 -6.24960 1.39998 1.43658 1.51012 2.43129 3.16596 3.53817 3.84309 3.92962 4.20704 4.40594 4.58861 4.66723 4.79600 4.85571 4.93505 5.06947 5.14237 5.24273 5.34289 5.43731 5.54422 5.57916 5.85145 6.15637 6.30607 6.61349 6.89299 7.42366 8.96507 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.070235 B = 0.012618 C = 0.011497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.565917 B = 2218.450276 C = 2434.796220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 H 0.054 0.946 4 C -0.112 4.112 5 C 0.032 3.968 6 N -0.673 5.673 7 C 0.084 3.916 8 H 0.032 0.968 9 C 0.043 3.957 10 C -0.526 4.526 11 H 0.057 0.943 12 C -0.004 4.004 13 N -0.937 5.937 14 Si 0.965 3.035 15 H -0.268 1.268 16 H -0.285 1.285 17 H -0.267 1.267 18 H 0.040 0.960 19 H 0.075 0.925 20 H 0.061 0.939 21 H 0.069 0.931 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.045 0.955 25 H 0.334 0.666 26 H -0.009 1.009 27 H -0.012 1.012 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.587 -6.047 -9.203 11.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.120 4.120 3 H 0.073 0.927 4 C -0.150 4.150 5 C -0.097 4.097 6 N -0.302 5.302 7 C -0.026 4.026 8 H 0.050 0.950 9 C 0.006 3.994 10 C -0.564 4.564 11 H 0.075 0.925 12 C -0.201 4.201 13 N -0.577 5.577 14 Si 0.789 3.211 15 H -0.193 1.193 16 H -0.210 1.210 17 H -0.192 1.192 18 H 0.059 0.941 19 H 0.094 0.906 20 H 0.080 0.920 21 H 0.088 0.912 22 H 0.108 0.892 23 H 0.103 0.897 24 H 0.063 0.937 25 H 0.149 0.851 26 H 0.009 0.991 27 H 0.007 0.993 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.138 -5.316 -9.295 11.158 hybrid contribution -0.164 -0.728 1.301 1.500 sum -3.302 -6.043 -7.994 10.552 Atomic orbital electron populations 1.21778 0.93495 1.02087 1.01773 1.21953 0.96536 0.98932 0.94544 0.92740 1.22361 0.99632 0.96523 0.96443 1.23001 0.99170 0.96574 0.90965 1.63594 1.34834 1.27935 1.03864 1.22487 0.90229 0.95245 0.94597 0.94993 1.18899 0.94130 0.93868 0.92504 1.21524 1.42476 0.93253 0.99169 0.92465 1.25971 0.96153 0.95837 1.02138 1.70104 1.49372 1.08492 1.29768 0.85511 0.79015 0.78275 0.78262 1.19303 1.21037 1.19201 0.94080 0.90641 0.91970 0.91211 0.89174 0.89658 0.93700 0.85122 0.99124 0.99342 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 8.91 71.98 0.64 -3.27 15 2 C -0.10 -3.53 3.21 -9.90 -0.03 -3.56 15 3 H 0.05 2.13 7.86 -2.38 -0.02 2.11 15 4 C -0.11 -3.12 6.64 31.48 0.21 -2.91 15 5 C 0.03 0.95 7.47 86.45 0.65 1.59 15 6 N -0.67 -26.71 7.10 -479.00 -3.40 -30.11 15 7 C 0.08 3.61 2.64 45.06 0.12 3.73 15 8 H 0.03 1.38 7.87 -2.39 -0.02 1.36 15 9 C 0.04 2.39 4.58 29.85 0.14 2.53 15 10 C -0.53 -30.59 8.85 25.60 0.23 -30.36 15 11 H 0.06 3.16 7.52 -2.91 -0.02 3.14 15 12 C 0.00 -0.24 5.46 84.66 0.46 0.23 15 13 N -0.94 -58.79 13.29 21.45 0.28 -58.51 15 14 Si 0.96 45.37 29.54 68.60 2.03 47.39 15 15 H -0.27 -12.13 7.11 99.48 0.71 -11.43 15 16 H -0.28 -13.15 7.11 99.48 0.71 -12.44 15 17 H -0.27 -11.97 7.11 99.48 0.71 -11.27 15 18 H 0.04 1.32 8.14 -2.39 -0.02 1.31 15 19 H 0.07 1.79 8.14 -2.39 -0.02 1.77 15 20 H 0.06 1.63 8.14 -2.39 -0.02 1.62 15 21 H 0.07 1.87 8.14 -2.38 -0.02 1.85 15 22 H 0.09 1.99 7.71 -2.39 -0.02 1.98 15 23 H 0.09 2.25 8.14 -2.38 -0.02 2.23 15 24 H 0.04 1.18 8.14 -2.39 -0.02 1.16 15 25 H 0.33 13.05 8.62 -89.69 -0.77 12.28 15 26 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 15 27 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 15 28 H 0.26 15.46 8.31 -92.70 -0.77 14.69 15 Total: -1.00 -65.89 232.01 1.66 -64.23 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.34 Total: 9.02 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 2.41 Total: -32.02 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -3.11 Total: -88.62 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -65.89 1.66 -64.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259946398.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.375 kcal (2) G-P(sol) polarization free energy of solvation -65.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds