Wall clock time and date at job start Mon Mar 30 2020 02:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.27363 * 2 1 4 4 C 1.54781 * 110.39618 * 122.05662 * 2 1 3 5 5 C 1.54937 * 102.83798 * 140.73086 * 4 2 1 6 6 N 1.48531 * 103.37331 * 322.79651 * 5 4 2 7 7 C 1.47901 * 105.82310 * 39.12709 * 6 5 4 8 8 H 1.09004 * 109.92027 * 94.01264 * 7 6 5 9 9 C 1.52990 * 109.91916 * 215.11709 * 7 6 5 10 10 C 1.50701 * 109.47158 * 293.54306 * 9 7 6 11 11 H 1.08001 * 119.99928 * 359.97438 * 10 9 7 12 12 C 1.37880 * 119.99841 * 180.02562 * 10 9 7 13 13 N 1.31510 * 120.00226 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99826 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47300 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47218 * 119.99516 * 14 12 10 17 17 H 1.48493 * 109.47167 * 239.99719 * 14 12 10 18 18 H 1.09008 * 109.46912 * 182.09065 * 1 2 3 19 19 H 1.08995 * 109.47477 * 302.08519 * 1 2 3 20 20 H 1.08993 * 109.47119 * 62.09320 * 1 2 3 21 21 H 1.08996 * 110.65506 * 22.44625 * 4 2 1 22 22 H 1.09005 * 110.87400 * 259.11173 * 4 2 1 23 23 H 1.09002 * 110.66811 * 204.28059 * 5 4 2 24 24 H 1.09001 * 110.66542 * 81.31698 * 5 4 2 25 25 H 1.00907 * 110.99775 * 159.63429 * 6 5 4 26 26 H 1.09000 * 109.47528 * 53.54312 * 9 7 6 27 27 H 1.09001 * 109.47236 * 173.54175 * 9 7 6 28 28 H 0.97002 * 120.00142 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0694 -0.7700 1.2296 5 6 3.2856 -1.5353 0.6501 6 7 2.8314 -1.9229 -0.7099 7 6 2.0645 -0.7672 -1.2236 8 1 2.7162 -0.1208 -1.8114 9 6 0.8999 -1.2565 -2.0867 10 6 1.4386 -1.9157 -3.3302 11 1 2.5050 -1.9789 -3.4892 12 6 0.5700 -2.4372 -4.2655 13 7 -0.7285 -2.3598 -4.0721 14 14 1.2377 -3.2549 -5.8066 15 1 2.7219 -3.2134 -5.7855 16 1 0.7822 -4.6675 -5.8544 17 1 0.7397 -2.5334 -7.0051 18 1 -0.3633 -1.0271 0.0375 19 1 -0.3634 0.5458 0.8706 20 1 -0.3633 0.4810 -0.9081 21 1 1.3199 -1.4657 1.6067 22 1 2.3851 -0.0800 2.0121 23 1 3.5048 -2.4193 1.2490 24 1 4.1582 -0.8846 0.5934 25 1 3.6171 -2.1301 -1.3082 26 1 0.3064 -1.9758 -1.5222 27 1 0.2740 -0.4092 -2.3666 28 1 -1.3396 -2.7270 -4.7299 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259946400.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:19 Heat of formation + Delta-G solvation = -12.597782 kcal Electronic energy + Delta-G solvation = -10001.050114 eV Core-core repulsion = 8244.229675 eV Total energy + Delta-G solvation = -1756.820438 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.31649 -32.94358 -31.56469 -30.06531 -26.47033 -24.64884 -22.55397 -20.57790 -18.02269 -16.67849 -15.66580 -14.61604 -14.13997 -13.42429 -13.04545 -12.80458 -11.90885 -11.60250 -11.34420 -11.15693 -10.95008 -10.67352 -10.36978 -10.27172 -10.22005 -9.75525 -9.18988 -8.85619 -8.23681 -7.60529 -5.88413 -3.87686 3.37360 3.44594 3.48320 4.55192 4.95201 5.27891 5.29964 5.47119 5.53756 5.78267 6.00280 6.07156 6.12294 6.25663 6.45227 6.50570 6.59870 6.75722 6.92144 7.11795 7.54212 7.80346 7.93304 8.10549 8.27537 8.57614 9.16963 9.73769 11.23137 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.069307 B = 0.013611 C = 0.011938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.900673 B = 2056.674413 C = 2344.901761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 H 0.059 0.941 4 C -0.118 4.118 5 C 0.033 3.967 6 N -0.653 5.653 7 C 0.079 3.921 8 H 0.031 0.969 9 C 0.036 3.964 10 C -0.504 4.504 11 H 0.050 0.950 12 C 0.054 3.946 13 N -0.898 5.898 14 Si 0.889 3.111 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.287 1.287 18 H 0.064 0.936 19 H 0.036 0.964 20 H 0.063 0.937 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.070 0.930 24 H 0.026 0.974 25 H 0.333 0.667 26 H 0.028 0.972 27 H 0.020 0.980 28 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.914 3.395 7.451 9.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.120 4.120 3 H 0.077 0.923 4 C -0.156 4.156 5 C -0.096 4.096 6 N -0.282 5.282 7 C -0.030 4.030 8 H 0.049 0.951 9 C -0.001 4.001 10 C -0.542 4.542 11 H 0.068 0.932 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.717 3.283 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.213 1.213 18 H 0.083 0.917 19 H 0.055 0.945 20 H 0.082 0.918 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.045 0.955 25 H 0.148 0.852 26 H 0.046 0.954 27 H 0.038 0.962 28 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.179 2.933 7.561 9.123 hybrid contribution 1.084 0.173 -1.140 1.583 sum 5.263 3.106 6.421 8.865 Atomic orbital electron populations 1.21856 0.94491 1.02511 1.00566 1.22074 0.96839 0.97966 0.95144 0.92282 1.22574 0.97631 0.98465 0.96895 1.22998 0.95639 0.97968 0.93030 1.63028 1.24967 1.38263 1.01917 1.22441 0.97109 0.89573 0.93903 0.95053 1.19228 0.91706 0.96142 0.93002 1.21238 0.92538 1.36381 1.04080 0.93193 1.24980 0.94886 0.96493 0.98256 1.69966 1.01465 1.46849 1.35559 0.86594 0.78992 0.79238 0.83460 1.19964 1.21155 1.21301 0.91671 0.94510 0.91845 0.91029 0.92338 0.91199 0.95532 0.85213 0.95357 0.96161 0.93295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 7.93 37.16 0.29 -2.19 15 2 C -0.10 -1.82 3.58 -89.16 -0.32 -2.14 15 3 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 4 C -0.12 -1.86 6.63 -24.77 -0.16 -2.02 15 5 C 0.03 0.54 7.54 -1.90 -0.01 0.52 15 6 N -0.65 -13.13 6.92 -103.13 -0.71 -13.85 15 7 C 0.08 1.69 3.21 -66.65 -0.21 1.48 15 8 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 9 C 0.04 0.95 3.49 -27.89 -0.10 0.86 15 10 C -0.50 -14.45 8.89 -34.44 -0.31 -14.76 15 11 H 0.05 1.40 7.74 -52.49 -0.41 0.99 15 12 C 0.05 1.58 5.46 -17.82 -0.10 1.48 15 13 N -0.90 -27.45 13.29 55.43 0.74 -26.71 15 14 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 15 15 H -0.27 -6.71 7.11 56.52 0.40 -6.31 15 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 18 H 0.06 1.29 6.90 -51.92 -0.36 0.94 15 19 H 0.04 0.56 8.14 -51.93 -0.42 0.13 15 20 H 0.06 1.22 6.63 -51.93 -0.34 0.88 15 21 H 0.07 1.16 7.85 -51.93 -0.41 0.75 15 22 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 23 H 0.07 1.04 8.14 -51.93 -0.42 0.61 15 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 15 25 H 0.33 6.44 8.92 -39.29 -0.35 6.09 15 26 H 0.03 0.81 6.99 -51.93 -0.36 0.44 15 27 H 0.02 0.56 6.55 -51.93 -0.34 0.22 15 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 LS Contribution 226.52 15.07 3.41 3.41 Total: -1.00 -30.40 226.52 -6.74 -37.14 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.24 Total: -0.38 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -0.92 Total: -16.76 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.02 Total: -40.56 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -30.40 -6.74 -37.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259946400.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.542 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds