Wall clock time and date at job start Mon Mar 30 2020 02:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.27363 * 2 1 4 4 C 1.54781 * 110.39618 * 122.05662 * 2 1 3 5 5 C 1.54937 * 102.83798 * 140.73086 * 4 2 1 6 6 N 1.48531 * 103.37331 * 322.79651 * 5 4 2 7 7 C 1.47901 * 105.82310 * 39.12709 * 6 5 4 8 8 H 1.09004 * 109.92027 * 94.01264 * 7 6 5 9 9 C 1.52990 * 109.91916 * 215.11709 * 7 6 5 10 10 C 1.50701 * 109.47158 * 293.54306 * 9 7 6 11 11 H 1.08001 * 119.99928 * 359.97438 * 10 9 7 12 12 C 1.37880 * 119.99841 * 180.02562 * 10 9 7 13 13 N 1.31510 * 120.00226 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99826 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47300 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47218 * 119.99516 * 14 12 10 17 17 H 1.48493 * 109.47167 * 239.99719 * 14 12 10 18 18 H 1.09008 * 109.46912 * 182.09065 * 1 2 3 19 19 H 1.08995 * 109.47477 * 302.08519 * 1 2 3 20 20 H 1.08993 * 109.47119 * 62.09320 * 1 2 3 21 21 H 1.08996 * 110.65506 * 22.44625 * 4 2 1 22 22 H 1.09005 * 110.87400 * 259.11173 * 4 2 1 23 23 H 1.09002 * 110.66811 * 204.28059 * 5 4 2 24 24 H 1.09001 * 110.66542 * 81.31698 * 5 4 2 25 25 H 1.00907 * 110.99775 * 159.63429 * 6 5 4 26 26 H 1.09000 * 109.47528 * 53.54312 * 9 7 6 27 27 H 1.09001 * 109.47236 * 173.54175 * 9 7 6 28 28 H 0.97002 * 120.00142 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0694 -0.7700 1.2296 5 6 3.2856 -1.5353 0.6501 6 7 2.8314 -1.9229 -0.7099 7 6 2.0645 -0.7672 -1.2236 8 1 2.7162 -0.1208 -1.8114 9 6 0.8999 -1.2565 -2.0867 10 6 1.4386 -1.9157 -3.3302 11 1 2.5050 -1.9789 -3.4892 12 6 0.5700 -2.4372 -4.2655 13 7 -0.7285 -2.3598 -4.0721 14 14 1.2377 -3.2549 -5.8066 15 1 2.7219 -3.2134 -5.7855 16 1 0.7822 -4.6675 -5.8544 17 1 0.7397 -2.5334 -7.0051 18 1 -0.3633 -1.0271 0.0375 19 1 -0.3634 0.5458 0.8706 20 1 -0.3633 0.4810 -0.9081 21 1 1.3199 -1.4657 1.6067 22 1 2.3851 -0.0800 2.0121 23 1 3.5048 -2.4193 1.2490 24 1 4.1582 -0.8846 0.5934 25 1 3.6171 -2.1301 -1.3082 26 1 0.3064 -1.9758 -1.5222 27 1 0.2740 -0.4092 -2.3666 28 1 -1.3396 -2.7270 -4.7299 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259946400.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:19 Heat of formation + Delta-G solvation = -33.666947 kcal Electronic energy + Delta-G solvation = -10001.963741 eV Core-core repulsion = 8244.229675 eV Total energy + Delta-G solvation = -1757.734066 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.83538 -35.07393 -33.08630 -31.85554 -28.26262 -26.30001 -24.47069 -21.98131 -19.66131 -18.63364 -17.43318 -16.54570 -15.69155 -15.04911 -14.69478 -14.41298 -13.77819 -13.31837 -12.97236 -12.86614 -12.65628 -12.46545 -12.18964 -11.96541 -11.65422 -11.37215 -11.05126 -10.89277 -10.48448 -9.16327 -8.12370 -6.19844 1.39968 1.40897 1.53230 2.44748 3.19646 3.54030 3.86803 3.94848 4.09111 4.45850 4.63107 4.69121 4.76977 4.86222 4.99275 5.14668 5.17878 5.23880 5.33939 5.43125 5.64161 5.68066 5.91917 6.21135 6.40461 6.66075 6.95496 7.46406 8.99582 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.069307 B = 0.013611 C = 0.011938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.900673 B = 2056.674413 C = 2344.901761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.101 4.101 3 H 0.081 0.919 4 C -0.111 4.111 5 C 0.035 3.965 6 N -0.676 5.676 7 C 0.081 3.919 8 H 0.027 0.973 9 C 0.047 3.953 10 C -0.521 4.521 11 H 0.053 0.947 12 C -0.005 4.005 13 N -0.936 5.936 14 Si 0.961 3.039 15 H -0.264 1.264 16 H -0.282 1.282 17 H -0.280 1.280 18 H 0.037 0.963 19 H 0.071 0.929 20 H 0.040 0.960 21 H 0.063 0.937 22 H 0.095 0.905 23 H 0.085 0.915 24 H 0.048 0.952 25 H 0.334 0.666 26 H -0.006 1.006 27 H -0.004 1.004 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.408 3.674 8.149 10.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.120 4.120 3 H 0.100 0.900 4 C -0.149 4.149 5 C -0.094 4.094 6 N -0.306 5.306 7 C -0.029 4.029 8 H 0.045 0.955 9 C 0.010 3.990 10 C -0.559 4.559 11 H 0.071 0.929 12 C -0.202 4.202 13 N -0.577 5.577 14 Si 0.787 3.213 15 H -0.188 1.188 16 H -0.208 1.208 17 H -0.206 1.206 18 H 0.056 0.944 19 H 0.089 0.911 20 H 0.059 0.941 21 H 0.082 0.918 22 H 0.113 0.887 23 H 0.103 0.897 24 H 0.066 0.934 25 H 0.149 0.851 26 H 0.013 0.987 27 H 0.015 0.985 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.690 3.216 8.274 10.544 hybrid contribution 0.602 0.089 -1.327 1.460 sum 6.292 3.305 6.947 9.939 Atomic orbital electron populations 1.21766 0.95122 1.00986 1.01026 1.22091 0.96290 0.98977 0.94631 0.90022 1.22586 0.97103 0.98635 0.96569 1.23111 0.96461 0.99194 0.90619 1.62910 1.25633 1.38121 1.03907 1.22243 0.95487 0.90257 0.94916 0.95503 1.19027 0.92879 0.94212 0.92917 1.21658 0.92794 1.36400 1.05098 0.92875 1.25914 0.95144 0.97226 1.01868 1.70105 1.02851 1.47888 1.36895 0.85458 0.78792 0.77994 0.79104 1.18777 1.20769 1.20583 0.94406 0.91059 0.94069 0.91829 0.88689 0.89691 0.93353 0.85106 0.98729 0.98547 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 7.93 71.98 0.57 -4.18 15 2 C -0.10 -3.45 3.58 -9.85 -0.04 -3.49 15 3 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 4 C -0.11 -3.15 6.63 31.86 0.21 -2.94 15 5 C 0.03 1.02 7.54 86.65 0.65 1.68 15 6 N -0.68 -26.55 6.92 -480.21 -3.32 -29.87 15 7 C 0.08 3.44 3.21 45.06 0.14 3.59 15 8 H 0.03 1.15 8.14 -2.38 -0.02 1.13 15 9 C 0.05 2.55 3.49 29.84 0.10 2.65 15 10 C -0.52 -30.40 8.89 25.60 0.23 -30.17 15 11 H 0.05 2.99 7.74 -2.91 -0.02 2.96 15 12 C 0.00 -0.30 5.46 84.66 0.46 0.17 15 13 N -0.94 -58.59 13.29 21.45 0.28 -58.31 15 14 Si 0.96 45.81 29.54 68.60 2.03 47.83 15 15 H -0.26 -11.97 7.11 99.48 0.71 -11.27 15 16 H -0.28 -13.19 7.11 99.48 0.71 -12.49 15 17 H -0.28 -12.97 7.11 99.48 0.71 -12.26 15 18 H 0.04 1.54 6.90 -2.38 -0.02 1.52 15 19 H 0.07 2.04 8.14 -2.39 -0.02 2.02 15 20 H 0.04 1.63 6.63 -2.39 -0.02 1.61 15 21 H 0.06 1.91 7.85 -2.39 -0.02 1.89 15 22 H 0.09 2.05 8.14 -2.38 -0.02 2.03 15 23 H 0.08 2.25 8.14 -2.39 -0.02 2.23 15 24 H 0.05 1.23 8.14 -2.39 -0.02 1.21 15 25 H 0.33 12.62 8.92 -89.69 -0.80 11.82 15 26 H -0.01 -0.34 6.99 -2.39 -0.02 -0.36 15 27 H 0.00 -0.21 6.55 -2.39 -0.02 -0.22 15 28 H 0.26 15.30 8.31 -92.71 -0.77 14.53 15 Total: -1.00 -65.92 226.52 1.66 -64.26 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.33 Total: 8.79 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 2.34 Total: -32.70 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -3.04 Total: -88.18 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -65.92 1.66 -64.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259946400.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.592 kcal (2) G-P(sol) polarization free energy of solvation -65.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds