Wall clock time and date at job start Mon Mar 30 2020 02:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.05415 * 2 1 4 4 C 1.53877 * 110.03375 * 238.58412 * 2 1 3 5 5 H 1.09002 * 110.03433 * 121.37752 * 4 2 1 6 6 N 1.46906 * 110.03183 * 0.02562 * 4 2 1 7 7 C 1.54261 * 106.64292 * 240.69339 * 4 2 1 8 8 C 1.54975 * 104.15832 * 336.44478 * 7 4 2 9 9 C 1.54266 * 110.03299 * 121.41785 * 2 1 3 10 10 H 1.09006 * 110.48485 * 24.08802 * 9 2 1 11 11 C 1.50701 * 110.48707 * 261.57523 * 9 2 1 12 12 H 1.07999 * 119.99534 * 359.97438 * 11 9 2 13 13 C 1.37870 * 119.99889 * 180.02562 * 11 9 2 14 14 N 1.31521 * 120.00497 * 359.97438 * 13 11 9 15 15 Si 1.86809 * 119.99976 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46943 * 89.99967 * 15 13 11 17 17 H 1.48502 * 109.47054 * 209.99694 * 15 13 11 18 18 H 1.48494 * 109.46704 * 329.99888 * 15 13 11 19 19 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47115 * 299.96152 * 1 2 3 21 21 H 1.08996 * 109.46924 * 59.96374 * 1 2 3 22 22 H 1.00896 * 111.00309 * 180.68741 * 6 4 2 23 23 H 1.00902 * 110.99923 * 304.64905 * 6 4 2 24 24 H 1.08996 * 110.48844 * 95.08619 * 7 4 2 25 25 H 1.09001 * 110.48660 * 217.73503 * 7 4 2 26 26 H 1.09005 * 110.71735 * 279.57737 * 8 7 4 27 27 H 1.08998 * 110.92349 * 156.29807 * 8 7 4 28 28 H 0.96993 * 120.00248 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0572 -0.7535 -1.2337 5 1 2.6860 -0.0951 -1.8330 6 7 0.9329 -1.2459 -2.0410 7 6 2.8882 -1.9406 -0.7047 8 6 3.3137 -1.5008 0.7191 9 6 2.0585 -0.7555 1.2368 10 1 1.3134 -1.4644 1.5980 11 6 2.4335 0.2148 2.3272 12 1 2.3131 1.2765 2.1700 13 6 2.9311 -0.2527 3.5249 14 7 3.0782 -1.5456 3.7161 15 14 3.3967 0.9501 4.8763 16 1 2.2191 1.1967 5.7467 17 1 4.5014 0.3793 5.6881 18 1 3.8396 2.2304 4.2682 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5132 0.8903 21 1 -0.3633 0.5144 -0.8896 22 1 1.2624 -1.7526 -2.8489 23 1 0.3111 -1.8148 -1.4861 24 1 2.2784 -2.8428 -0.6586 25 1 3.7644 -2.1028 -1.3325 26 1 4.1710 -0.8290 0.6751 27 1 3.5345 -2.3660 1.3441 28 1 3.4279 -1.8746 4.5589 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259967655.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:31 Heat of formation + Delta-G solvation = -39.461593 kcal Electronic energy + Delta-G solvation = -10137.604423 eV Core-core repulsion = 8379.619082 eV Total energy + Delta-G solvation = -1757.985341 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.70830 -35.06047 -32.77864 -31.87565 -28.50806 -25.78383 -24.96810 -21.39294 -19.65178 -18.70319 -17.15554 -16.53946 -15.85075 -14.95554 -14.34816 -14.29049 -13.62362 -13.33744 -13.06099 -12.98833 -12.69085 -12.44755 -12.22595 -11.49247 -11.36482 -11.30889 -10.81652 -10.69442 -10.44861 -9.42247 -8.11156 -6.20039 1.39997 1.40537 1.50882 2.43544 3.19195 3.79924 3.99876 4.09446 4.34434 4.60780 4.81987 4.86677 4.90227 4.98561 5.07618 5.19045 5.37685 5.42208 5.56274 5.63058 5.68988 5.93839 6.03379 6.33237 6.46172 6.76298 6.91674 7.46972 8.97492 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.073460 B = 0.014680 C = 0.013292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.070811 B = 1906.942475 C = 2106.040013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 H 0.050 0.950 4 C 0.099 3.901 5 H 0.078 0.922 6 N -0.837 5.837 7 C -0.149 4.149 8 C -0.098 4.098 9 C 0.046 3.954 10 H -0.001 1.001 11 C -0.528 4.528 12 H 0.050 0.950 13 C 0.010 3.990 14 N -0.921 5.921 15 Si 0.951 3.049 16 H -0.276 1.276 17 H -0.284 1.284 18 H -0.268 1.268 19 H 0.048 0.952 20 H 0.030 0.970 21 H 0.066 0.934 22 H 0.343 0.657 23 H 0.342 0.658 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.873 0.241 -7.759 7.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.107 4.107 3 H 0.068 0.932 4 C -0.013 4.013 5 H 0.096 0.904 6 N -0.367 5.367 7 C -0.189 4.189 8 C -0.137 4.137 9 C 0.028 3.972 10 H 0.018 0.982 11 C -0.566 4.566 12 H 0.068 0.932 13 C -0.189 4.189 14 N -0.561 5.561 15 Si 0.777 3.223 16 H -0.202 1.202 17 H -0.210 1.210 18 H -0.193 1.193 19 H 0.067 0.933 20 H 0.049 0.951 21 H 0.085 0.915 22 H 0.157 0.843 23 H 0.156 0.844 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.017 0.897 -7.746 8.054 hybrid contribution 0.845 -0.575 1.407 1.739 sum -1.172 0.322 -6.339 6.455 Atomic orbital electron populations 1.21453 0.94665 1.00758 1.00145 1.21841 0.96306 0.98347 0.94226 0.93191 1.21953 0.91013 0.94931 0.93393 0.90408 1.59099 1.18799 1.46990 1.11811 1.23199 1.00172 0.98397 0.97088 1.22229 0.98694 0.98588 0.94150 1.19495 0.92641 0.93388 0.91706 0.98249 1.21594 1.42066 0.93196 0.99784 0.93214 1.25765 0.95850 0.96632 1.00617 1.70087 1.46863 1.13774 1.25376 0.85663 0.77888 0.79445 0.79331 1.20164 1.20966 1.19274 0.93280 0.95095 0.91485 0.84329 0.84365 0.92388 0.91424 0.94837 0.94701 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.15 8.00 71.98 0.58 -3.57 15 2 C -0.09 -3.65 3.06 -10.07 -0.03 -3.69 15 3 H 0.05 2.18 7.66 -2.39 -0.02 2.16 15 4 C 0.10 3.39 4.02 45.64 0.18 3.57 15 5 H 0.08 2.56 8.14 -2.39 -0.02 2.54 15 6 N -0.84 -23.31 8.11 -165.67 -1.34 -24.65 15 7 C -0.15 -5.40 6.52 31.70 0.21 -5.19 15 8 C -0.10 -4.67 5.75 31.91 0.18 -4.48 15 9 C 0.05 2.35 2.26 -10.47 -0.02 2.32 15 10 H 0.00 -0.04 7.85 -2.38 -0.02 -0.06 15 11 C -0.53 -29.80 8.46 25.60 0.22 -29.58 15 12 H 0.05 2.78 7.54 -2.91 -0.02 2.75 15 13 C 0.01 0.55 5.35 84.65 0.45 1.00 15 14 N -0.92 -54.68 12.29 21.45 0.26 -54.42 15 15 Si 0.95 44.56 29.54 68.60 2.03 46.58 15 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 17 H -0.28 -13.05 7.11 99.48 0.71 -12.35 15 18 H -0.27 -12.18 7.11 99.48 0.71 -11.48 15 19 H 0.05 1.70 6.69 -2.38 -0.02 1.69 15 20 H 0.03 1.20 8.14 -2.39 -0.02 1.18 15 21 H 0.07 2.19 7.87 -2.39 -0.02 2.18 15 22 H 0.34 7.81 9.06 -89.70 -0.81 6.99 15 23 H 0.34 9.49 7.05 -89.69 -0.63 8.86 15 24 H 0.06 2.01 8.03 -2.39 -0.02 1.99 15 25 H 0.07 2.16 8.14 -2.39 -0.02 2.14 15 26 H 0.03 1.64 8.05 -2.38 -0.02 1.62 15 27 H 0.03 1.83 7.55 -2.39 -0.02 1.81 15 28 H 0.26 14.63 8.31 -92.71 -0.77 13.86 15 Total: -1.00 -60.53 224.75 2.41 -58.12 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -0.30 Total: 13.98 kcal Atomic # 6 Polarization: -41.38 SS G_CDS: 1.76 Total: -39.62 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -1.08 Total: -79.07 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -60.53 2.41 -58.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259967655.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.661 kcal (2) G-P(sol) polarization free energy of solvation -60.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds