Wall clock time and date at job start Mon Mar 30 2020 02:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.04849 * 2 1 4 4 C 1.54267 * 110.03351 * 121.41445 * 2 1 3 5 5 H 1.09003 * 110.59825 * 24.16184 * 4 2 1 6 6 C 1.50701 * 110.48790 * 261.57796 * 4 2 1 7 7 H 1.08002 * 119.99761 * 3.76524 * 6 4 2 8 8 C 1.37871 * 119.99694 * 184.05087 * 6 4 2 9 9 N 1.31514 * 120.00482 * 359.71466 * 8 6 4 10 10 Si 1.86801 * 119.99746 * 179.72062 * 8 6 4 11 11 H 1.48504 * 109.47209 * 89.99886 * 10 8 6 12 12 H 1.48501 * 109.47358 * 209.99377 * 10 8 6 13 13 H 1.48496 * 109.47341 * 329.99989 * 10 8 6 14 14 C 1.54884 * 104.19378 * 142.89578 * 4 2 1 15 15 C 1.54886 * 102.74981 * 322.05919 * 14 4 2 16 16 C 1.53869 * 110.03368 * 238.58607 * 2 1 3 17 17 H 1.09004 * 110.02949 * 359.97438 * 16 2 1 18 18 N 1.46890 * 110.07598 * 121.40528 * 16 2 1 19 19 H 1.09008 * 109.47243 * 298.58233 * 1 2 3 20 20 H 1.08997 * 109.47603 * 58.58044 * 1 2 3 21 21 H 1.09000 * 109.46777 * 178.58712 * 1 2 3 22 22 H 0.96995 * 120.00207 * 179.97438 * 9 8 6 23 23 H 1.08995 * 110.75555 * 80.37181 * 14 4 2 24 24 H 1.08999 * 110.75518 * 203.74350 * 14 4 2 25 25 H 1.08998 * 110.48789 * 156.62289 * 15 14 4 26 26 H 1.09005 * 110.48834 * 279.26404 * 15 14 4 27 27 H 1.00903 * 111.00406 * 178.64583 * 18 16 2 28 28 H 1.00901 * 111.00158 * 302.59526 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 6 2.0585 -0.7554 1.2369 5 1 1.3152 -1.4659 1.5988 6 6 2.4334 0.2150 2.3272 7 1 2.2561 1.2719 2.1938 8 6 3.0082 -0.2460 3.4926 9 7 3.2241 -1.5331 3.6550 10 14 3.4801 0.9576 4.8409 11 1 2.3345 1.1354 5.7690 12 1 4.6472 0.4280 5.5910 13 1 3.8337 2.2663 4.2347 14 6 3.3137 -1.5006 0.7191 15 6 2.8875 -1.9405 -0.7035 16 6 2.0571 -0.7535 -1.2337 17 1 1.2229 -1.1195 -1.8322 18 7 2.9053 0.1329 -2.0415 19 1 -0.3634 0.4917 0.9025 20 1 -0.3634 0.5357 -0.8769 21 1 -0.3633 -1.0274 -0.0253 22 1 3.6288 -1.8573 4.4747 23 1 4.1709 -0.8289 0.6751 24 1 3.5326 -2.3677 1.3423 25 1 3.7637 -2.1036 -1.3309 26 1 2.2772 -2.8425 -0.6571 27 1 3.2767 -0.3540 -2.8435 28 1 2.3997 0.9596 -2.3228 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259967660.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:32 Heat of formation + Delta-G solvation = -23.917812 kcal Electronic energy + Delta-G solvation = -10115.856393 eV Core-core repulsion = 8358.545081 eV Total energy + Delta-G solvation = -1757.311312 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.82342 -33.03236 -31.22567 -30.12983 -26.97562 -23.68020 -23.15163 -19.35617 -18.38253 -16.36219 -15.18810 -14.49704 -14.35767 -13.60769 -12.73463 -12.49434 -12.21009 -11.63360 -11.32111 -10.90260 -10.57120 -10.46049 -10.15633 -9.98259 -9.62407 -9.39575 -8.92252 -8.64540 -8.25087 -8.06226 -5.89495 -3.90876 3.37098 3.43600 3.47665 4.53142 5.09351 5.42033 5.64941 5.70884 5.90081 6.13762 6.30158 6.36798 6.50090 6.64700 6.81883 6.96992 7.07196 7.20927 7.37189 7.52525 7.82192 7.84174 7.95397 8.03948 8.18562 8.59708 9.10692 9.71815 11.19854 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.060744 B = 0.015208 C = 0.014226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.842321 B = 1840.695721 C = 1967.773411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 H 0.070 0.930 4 C 0.056 3.944 5 H 0.026 0.974 6 C -0.506 4.506 7 H 0.053 0.947 8 C 0.060 3.940 9 N -0.892 5.892 10 Si 0.887 3.113 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.275 1.275 14 C -0.092 4.092 15 C -0.124 4.124 16 C 0.090 3.910 17 H 0.018 0.982 18 N -0.839 5.839 19 H 0.056 0.944 20 H 0.031 0.969 21 H 0.044 0.956 22 H 0.258 0.742 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.328 0.672 28 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.297 0.972 -7.563 7.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 H 0.088 0.912 4 C 0.037 3.963 5 H 0.044 0.956 6 C -0.544 4.544 7 H 0.071 0.929 8 C -0.141 4.141 9 N -0.531 5.531 10 Si 0.716 3.284 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.200 1.200 14 C -0.130 4.130 15 C -0.162 4.162 16 C -0.021 4.021 17 H 0.036 0.964 18 N -0.368 5.368 19 H 0.075 0.925 20 H 0.050 0.950 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.139 0.861 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.773 0.888 -6.773 7.057 hybrid contribution -0.399 0.430 -0.005 0.587 sum -2.172 1.318 -6.778 7.238 Atomic orbital electron populations 1.21823 0.97021 1.00395 1.00129 1.21977 0.93246 1.00293 0.95252 0.91163 1.19463 0.92895 0.93733 0.90162 0.95552 1.21200 1.39745 0.93255 1.00204 0.92864 1.24965 0.95928 0.94984 0.98190 1.69964 1.44214 1.12546 1.26385 0.86671 0.77971 0.81575 0.82223 1.20884 1.21364 1.19996 1.22328 0.99648 1.00027 0.90965 1.22512 0.98069 0.95686 0.99928 1.22137 0.92463 0.93345 0.94116 0.96412 1.58815 1.41926 1.10082 1.25996 0.92499 0.94968 0.93683 0.93269 0.93103 0.91758 0.93291 0.93072 0.86054 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.84 37.16 0.33 -2.21 15 2 C -0.09 -1.89 2.81 -89.50 -0.25 -2.15 15 3 H 0.07 1.59 7.45 -51.93 -0.39 1.20 15 4 C 0.06 1.43 2.32 -90.11 -0.21 1.22 15 5 H 0.03 0.73 7.86 -51.93 -0.41 0.32 15 6 C -0.51 -14.30 8.49 -34.44 -0.29 -14.59 15 7 H 0.05 1.50 7.58 -52.49 -0.40 1.10 15 8 C 0.06 1.72 5.33 -17.82 -0.09 1.62 15 9 N -0.89 -26.26 12.00 55.43 0.67 -25.59 15 10 Si 0.89 21.90 29.54 -169.99 -5.02 16.87 15 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 12 H -0.29 -7.06 7.11 56.52 0.40 -6.65 15 13 H -0.27 -6.72 7.11 56.52 0.40 -6.32 15 14 C -0.09 -2.25 5.60 -24.74 -0.14 -2.39 15 15 C -0.12 -2.49 6.53 -25.07 -0.16 -2.65 15 16 C 0.09 1.69 3.68 -66.60 -0.25 1.44 15 17 H 0.02 0.31 7.67 -51.93 -0.40 -0.09 15 18 N -0.84 -13.89 9.10 -3.72 -0.03 -13.93 15 19 H 0.06 1.09 8.14 -51.92 -0.42 0.67 15 20 H 0.03 0.51 8.14 -51.93 -0.42 0.09 15 21 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 23 H 0.05 1.33 8.05 -51.93 -0.42 0.91 15 24 H 0.06 1.70 7.36 -51.93 -0.38 1.32 15 25 H 0.05 0.91 8.01 -51.93 -0.42 0.49 15 26 H 0.05 0.98 8.14 -51.93 -0.42 0.55 15 27 H 0.33 4.61 9.02 -39.29 -0.35 4.26 15 28 H 0.33 4.88 9.02 -39.29 -0.35 4.52 15 LS Contribution 228.47 15.07 3.44 3.44 Total: -1.00 -29.36 228.47 -6.36 -35.71 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.34 Total: 3.19 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -1.07 Total: -19.70 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.63 Total: -39.52 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.36 -6.36 -35.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259967660.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.796 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds