Wall clock time and date at job start Mon Mar 30 2020 02:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.04849 * 2 1 4 4 C 1.54267 * 110.03351 * 121.41445 * 2 1 3 5 5 H 1.09003 * 110.59825 * 24.16184 * 4 2 1 6 6 C 1.50701 * 110.48790 * 261.57796 * 4 2 1 7 7 H 1.08002 * 119.99761 * 3.76524 * 6 4 2 8 8 C 1.37871 * 119.99694 * 184.05087 * 6 4 2 9 9 N 1.31514 * 120.00482 * 359.71466 * 8 6 4 10 10 Si 1.86801 * 119.99746 * 179.72062 * 8 6 4 11 11 H 1.48504 * 109.47209 * 89.99886 * 10 8 6 12 12 H 1.48501 * 109.47358 * 209.99377 * 10 8 6 13 13 H 1.48496 * 109.47341 * 329.99989 * 10 8 6 14 14 C 1.54884 * 104.19378 * 142.89578 * 4 2 1 15 15 C 1.54886 * 102.74981 * 322.05919 * 14 4 2 16 16 C 1.53869 * 110.03368 * 238.58607 * 2 1 3 17 17 H 1.09004 * 110.02949 * 359.97438 * 16 2 1 18 18 N 1.46890 * 110.07598 * 121.40528 * 16 2 1 19 19 H 1.09008 * 109.47243 * 298.58233 * 1 2 3 20 20 H 1.08997 * 109.47603 * 58.58044 * 1 2 3 21 21 H 1.09000 * 109.46777 * 178.58712 * 1 2 3 22 22 H 0.96995 * 120.00207 * 179.97438 * 9 8 6 23 23 H 1.08995 * 110.75555 * 80.37181 * 14 4 2 24 24 H 1.08999 * 110.75518 * 203.74350 * 14 4 2 25 25 H 1.08998 * 110.48789 * 156.62289 * 15 14 4 26 26 H 1.09005 * 110.48834 * 279.26404 * 15 14 4 27 27 H 1.00903 * 111.00406 * 178.64583 * 18 16 2 28 28 H 1.00901 * 111.00158 * 302.59526 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 6 2.0585 -0.7554 1.2369 5 1 1.3152 -1.4659 1.5988 6 6 2.4334 0.2150 2.3272 7 1 2.2561 1.2719 2.1938 8 6 3.0082 -0.2460 3.4926 9 7 3.2241 -1.5331 3.6550 10 14 3.4801 0.9576 4.8409 11 1 2.3345 1.1354 5.7690 12 1 4.6472 0.4280 5.5910 13 1 3.8337 2.2663 4.2347 14 6 3.3137 -1.5006 0.7191 15 6 2.8875 -1.9405 -0.7035 16 6 2.0571 -0.7535 -1.2337 17 1 1.2229 -1.1195 -1.8322 18 7 2.9053 0.1329 -2.0415 19 1 -0.3634 0.4917 0.9025 20 1 -0.3634 0.5357 -0.8769 21 1 -0.3633 -1.0274 -0.0253 22 1 3.6288 -1.8573 4.4747 23 1 4.1709 -0.8289 0.6751 24 1 3.5326 -2.3677 1.3423 25 1 3.7637 -2.1036 -1.3309 26 1 2.2772 -2.8425 -0.6571 27 1 3.2767 -0.3540 -2.8435 28 1 2.3997 0.9596 -2.3228 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259967660.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:32 Heat of formation + Delta-G solvation = -43.869745 kcal Electronic energy + Delta-G solvation = -10116.721574 eV Core-core repulsion = 8358.545081 eV Total energy + Delta-G solvation = -1758.176493 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.52450 -34.98479 -32.93902 -31.81799 -28.88738 -25.50505 -24.91506 -21.24023 -20.04194 -18.46093 -16.71614 -16.51596 -15.82502 -15.36994 -14.56004 -14.14789 -13.89142 -13.44491 -13.05800 -12.88854 -12.49988 -12.35697 -11.81852 -11.77210 -11.36169 -11.25588 -10.81541 -10.72007 -10.41355 -9.38479 -8.07761 -6.16383 1.40323 1.41304 1.51668 2.45349 3.22122 3.77574 4.03555 4.07373 4.35787 4.62061 4.75111 4.79358 4.87966 5.04611 5.15244 5.24904 5.38164 5.47108 5.55913 5.58664 5.70945 5.97401 6.08645 6.44022 6.51629 6.80370 6.94147 7.49774 9.00601 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.060744 B = 0.015208 C = 0.014226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.842321 B = 1840.695721 C = 1967.773411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 H 0.055 0.945 4 C 0.047 3.953 5 H -0.002 1.002 6 C -0.525 4.525 7 H 0.047 0.953 8 C 0.009 3.991 9 N -0.921 5.921 10 Si 0.951 3.049 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.270 1.270 14 C -0.087 4.087 15 C -0.116 4.116 16 C 0.100 3.900 17 H 0.045 0.955 18 N -0.848 5.848 19 H 0.041 0.959 20 H 0.065 0.935 21 H 0.049 0.951 22 H 0.258 0.742 23 H 0.026 0.974 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.346 0.654 28 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 1.610 -8.794 9.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.105 4.105 3 H 0.073 0.927 4 C 0.028 3.972 5 H 0.016 0.984 6 C -0.564 4.564 7 H 0.066 0.934 8 C -0.189 4.189 9 N -0.560 5.560 10 Si 0.777 3.223 11 H -0.200 1.200 12 H -0.210 1.210 13 H -0.195 1.195 14 C -0.125 4.125 15 C -0.154 4.154 16 C -0.012 4.012 17 H 0.063 0.937 18 N -0.381 5.381 19 H 0.060 0.940 20 H 0.084 0.916 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.159 0.841 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.170 1.535 -8.025 8.454 hybrid contribution -0.267 0.227 0.384 0.520 sum -2.436 1.762 -7.641 8.212 Atomic orbital electron populations 1.21757 0.94933 1.01116 1.01034 1.21854 0.95107 0.98991 0.94544 0.92670 1.19464 0.92737 0.93335 0.91640 0.98374 1.21568 1.39786 0.93526 1.01483 0.93432 1.25754 0.95986 0.96660 1.00531 1.70093 1.44842 1.14145 1.26959 0.85668 0.77823 0.79449 0.79402 1.20035 1.20960 1.19479 1.22111 0.98394 0.98209 0.93804 1.22446 0.99239 0.96812 0.96918 1.21925 0.93144 0.92530 0.93556 0.93726 1.58670 1.41906 1.10517 1.26961 0.93960 0.91581 0.93176 0.93270 0.95558 0.94715 0.91513 0.92004 0.84077 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 8.84 71.98 0.64 -3.99 15 2 C -0.09 -3.57 2.81 -10.07 -0.03 -3.60 15 3 H 0.05 2.44 7.45 -2.39 -0.02 2.42 15 4 C 0.05 2.43 2.32 -10.47 -0.02 2.41 15 5 H 0.00 -0.11 7.86 -2.39 -0.02 -0.13 15 6 C -0.53 -30.25 8.49 25.60 0.22 -30.03 15 7 H 0.05 2.71 7.58 -2.91 -0.02 2.69 15 8 C 0.01 0.51 5.33 84.65 0.45 0.96 15 9 N -0.92 -55.44 12.00 21.45 0.26 -55.18 15 10 Si 0.95 45.35 29.54 68.60 2.03 47.38 15 11 H -0.27 -12.68 7.11 99.48 0.71 -11.97 15 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 15 13 H -0.27 -12.56 7.11 99.48 0.71 -11.86 15 14 C -0.09 -4.34 5.60 31.88 0.18 -4.16 15 15 C -0.12 -4.46 6.53 31.67 0.21 -4.26 15 16 C 0.10 3.45 3.68 45.64 0.17 3.62 15 17 H 0.04 1.36 7.67 -2.38 -0.02 1.34 15 18 N -0.85 -25.49 9.10 -165.70 -1.51 -27.00 15 19 H 0.04 1.58 8.14 -2.38 -0.02 1.56 15 20 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 21 H 0.05 1.70 8.14 -2.39 -0.02 1.68 15 22 H 0.26 14.80 8.31 -92.71 -0.77 14.03 15 23 H 0.03 1.39 8.05 -2.39 -0.02 1.37 15 24 H 0.03 1.89 7.36 -2.39 -0.02 1.87 15 25 H 0.07 2.32 8.01 -2.39 -0.02 2.30 15 26 H 0.06 2.24 8.14 -2.38 -0.02 2.22 15 27 H 0.35 8.46 9.02 -89.69 -0.81 7.65 15 28 H 0.35 8.99 9.02 -89.69 -0.81 8.18 15 Total: -1.00 -63.31 228.47 2.10 -61.21 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -0.48 Total: 12.65 kcal Atomic # 6 Polarization: -40.86 SS G_CDS: 1.81 Total: -39.06 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -1.25 Total: -82.18 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -63.31 2.10 -61.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259967660.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.341 kcal (2) G-P(sol) polarization free energy of solvation -63.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds