Wall clock time and date at job start Mon Mar 30 2020 02:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.01596 * 2 1 4 4 C 1.53875 * 110.03438 * 238.55727 * 2 1 3 5 5 H 1.08997 * 110.02871 * 121.42941 * 4 2 1 6 6 N 1.46897 * 110.03084 * 359.97438 * 4 2 1 7 7 C 1.54266 * 106.59867 * 240.70963 * 4 2 1 8 8 C 1.54893 * 104.19427 * 23.61174 * 7 4 2 9 9 C 1.54268 * 110.03661 * 121.38663 * 2 1 3 10 10 H 1.08998 * 110.49000 * 214.49011 * 9 2 1 11 11 C 1.50703 * 110.48489 * 337.00332 * 9 2 1 12 12 H 1.07998 * 120.00538 * 84.90389 * 11 9 2 13 13 C 1.37874 * 119.99721 * 264.90318 * 11 9 2 14 14 N 1.31510 * 120.00398 * 0.02562 * 13 11 9 15 15 Si 1.86810 * 119.99959 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46966 * 180.02562 * 15 13 11 17 17 H 1.48498 * 109.47154 * 299.99789 * 15 13 11 18 18 H 1.48490 * 109.46804 * 60.00313 * 15 13 11 19 19 H 1.08998 * 109.47190 * 304.94834 * 1 2 3 20 20 H 1.08993 * 109.46983 * 64.95809 * 1 2 3 21 21 H 1.08999 * 109.46670 * 184.95441 * 1 2 3 22 22 H 1.00896 * 110.99774 * 179.97438 * 6 4 2 23 23 H 1.00899 * 111.00403 * 303.95452 * 6 4 2 24 24 H 1.09001 * 110.48198 * 142.28703 * 7 4 2 25 25 H 1.08995 * 110.48964 * 264.80084 * 7 4 2 26 26 H 1.09003 * 110.75700 * 203.73650 * 8 7 4 27 27 H 1.09002 * 110.75452 * 80.36901 * 8 7 4 28 28 H 0.96999 * 120.00699 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0571 -0.7541 -1.2334 5 1 2.6867 -0.0961 -1.8323 6 7 0.9329 -1.2479 -2.0397 7 6 2.8876 -1.9409 -0.7026 8 6 2.3282 -2.1897 0.7202 9 6 2.0585 -0.7548 1.2372 10 1 2.9799 -0.2978 1.5982 11 6 1.0184 -0.7739 2.3275 12 1 0.2519 -1.5348 2.3295 13 6 1.0453 0.1800 3.3227 14 7 1.9783 1.1068 3.3202 15 14 -0.2445 0.1567 4.6739 16 1 0.0030 1.2795 5.6137 17 1 -1.5942 0.3039 4.0724 18 1 -0.1678 -1.1310 5.4092 19 1 -0.3633 0.5887 0.8423 20 1 -0.3633 0.4350 -0.9310 21 1 -0.3632 -1.0238 0.0888 22 1 1.2625 -1.7450 -2.8535 23 1 0.3178 -1.8260 -1.4870 24 1 2.7403 -2.8202 -1.3296 25 1 3.9444 -1.6776 -0.6585 26 1 3.0677 -2.6924 1.3436 27 1 1.4033 -2.7648 0.6764 28 1 1.9974 1.7777 4.0205 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259967666.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:34 Heat of formation + Delta-G solvation = -19.128088 kcal Electronic energy + Delta-G solvation = -10247.708692 eV Core-core repulsion = 8490.605079 eV Total energy + Delta-G solvation = -1757.103614 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.14113 -33.02905 -31.06721 -29.87089 -26.58613 -24.22239 -23.39478 -19.35605 -18.04846 -16.04489 -15.77816 -14.60836 -14.26167 -13.73235 -12.69216 -12.29890 -11.75403 -11.62942 -11.28581 -10.98975 -10.75846 -10.51887 -10.29915 -9.98059 -9.54580 -9.29344 -8.91730 -8.69205 -8.33638 -8.02938 -5.95858 -3.95233 3.34494 3.39509 3.41906 4.48004 5.18099 5.36160 5.64024 5.70336 5.81087 6.32019 6.41617 6.52498 6.68014 6.72403 6.87151 6.93036 7.01777 7.11699 7.47534 7.62784 7.66180 7.85097 7.87052 8.03022 8.06802 8.53808 9.09719 9.65327 11.14232 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.069900 B = 0.015645 C = 0.014814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.476421 B = 1789.302298 C = 1889.592694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.081 4.081 3 H 0.052 0.948 4 C 0.086 3.914 5 H 0.062 0.938 6 N -0.839 5.839 7 C -0.159 4.159 8 C -0.117 4.117 9 C 0.041 3.959 10 H 0.054 0.946 11 C -0.498 4.498 12 H 0.052 0.948 13 C 0.062 3.938 14 N -0.895 5.895 15 Si 0.885 3.115 16 H -0.288 1.288 17 H -0.277 1.277 18 H -0.278 1.278 19 H 0.052 0.948 20 H 0.031 0.969 21 H 0.036 0.964 22 H 0.322 0.678 23 H 0.341 0.659 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.486 -3.916 -5.951 7.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.026 4.026 5 H 0.081 0.919 6 N -0.368 5.368 7 C -0.198 4.198 8 C -0.155 4.155 9 C 0.022 3.978 10 H 0.072 0.928 11 C -0.536 4.536 12 H 0.070 0.930 13 C -0.139 4.139 14 N -0.533 5.533 15 Si 0.713 3.287 16 H -0.214 1.214 17 H -0.202 1.202 18 H -0.204 1.204 19 H 0.071 0.929 20 H 0.050 0.950 21 H 0.055 0.945 22 H 0.133 0.867 23 H 0.155 0.845 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.625 -2.967 -5.929 6.660 hybrid contribution -0.198 -0.923 0.998 1.373 sum -0.823 -3.889 -4.931 6.334 Atomic orbital electron populations 1.21301 0.95499 1.00039 0.98710 1.21913 0.96297 0.98353 0.93516 0.92908 1.22196 0.90463 0.95068 0.94862 0.91930 1.59156 1.20307 1.46297 1.11064 1.23191 0.99958 0.97856 0.98809 1.22593 0.98504 1.00923 0.93468 1.19695 0.97619 0.88885 0.91596 0.92754 1.20983 1.12192 1.12230 1.08171 0.92982 1.24977 0.95593 0.95703 0.97671 1.69920 1.33364 1.15973 1.34060 0.86766 0.82386 0.77433 0.82073 1.21405 1.20230 1.20392 0.92929 0.95008 0.94505 0.86718 0.84491 0.93791 0.92463 0.93542 0.93286 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.15 6.99 37.16 0.26 -1.89 15 2 C -0.08 -1.83 3.42 -89.50 -0.31 -2.14 15 3 H 0.05 1.28 8.14 -51.93 -0.42 0.86 15 4 C 0.09 1.60 4.03 -66.60 -0.27 1.33 15 5 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 6 N -0.84 -13.80 7.95 -3.72 -0.03 -13.83 15 7 C -0.16 -2.85 6.52 -25.07 -0.16 -3.01 15 8 C -0.12 -2.46 6.32 -24.74 -0.16 -2.62 15 9 C 0.04 1.01 2.81 -90.11 -0.25 0.76 15 10 H 0.05 1.51 7.43 -51.93 -0.39 1.13 15 11 C -0.50 -13.46 6.08 -34.44 -0.21 -13.67 15 12 H 0.05 1.40 7.77 -52.49 -0.41 0.99 15 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 14 N -0.89 -26.15 12.86 55.43 0.71 -25.44 15 15 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 15 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 19 H 0.05 1.27 7.34 -51.93 -0.38 0.89 15 20 H 0.03 0.64 7.65 -51.93 -0.40 0.24 15 21 H 0.04 0.77 6.82 -51.93 -0.35 0.42 15 22 H 0.32 4.46 9.06 -39.29 -0.36 4.10 15 23 H 0.34 5.66 7.25 -39.29 -0.28 5.38 15 24 H 0.04 0.70 8.03 -51.93 -0.42 0.28 15 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 27 H 0.05 1.02 8.03 -51.93 -0.42 0.60 15 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 LS Contribution 223.56 15.07 3.37 3.37 Total: -1.00 -28.08 223.56 -6.39 -34.48 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -4.23 Total: 4.62 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -1.19 Total: -19.61 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.68 Total: -39.27 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -28.08 -6.39 -34.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259967666.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.347 kcal (2) G-P(sol) polarization free energy of solvation -28.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds