Wall clock time and date at job start Mon Mar 30 2020 02:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.01596 * 2 1 4 4 C 1.53875 * 110.03438 * 238.55727 * 2 1 3 5 5 H 1.08997 * 110.02871 * 121.42941 * 4 2 1 6 6 N 1.46897 * 110.03084 * 359.97438 * 4 2 1 7 7 C 1.54266 * 106.59867 * 240.70963 * 4 2 1 8 8 C 1.54893 * 104.19427 * 23.61174 * 7 4 2 9 9 C 1.54268 * 110.03661 * 121.38663 * 2 1 3 10 10 H 1.08998 * 110.49000 * 214.49011 * 9 2 1 11 11 C 1.50703 * 110.48489 * 337.00332 * 9 2 1 12 12 H 1.07998 * 120.00538 * 84.90389 * 11 9 2 13 13 C 1.37874 * 119.99721 * 264.90318 * 11 9 2 14 14 N 1.31510 * 120.00398 * 0.02562 * 13 11 9 15 15 Si 1.86810 * 119.99959 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46966 * 180.02562 * 15 13 11 17 17 H 1.48498 * 109.47154 * 299.99789 * 15 13 11 18 18 H 1.48490 * 109.46804 * 60.00313 * 15 13 11 19 19 H 1.08998 * 109.47190 * 304.94834 * 1 2 3 20 20 H 1.08993 * 109.46983 * 64.95809 * 1 2 3 21 21 H 1.08999 * 109.46670 * 184.95441 * 1 2 3 22 22 H 1.00896 * 110.99774 * 179.97438 * 6 4 2 23 23 H 1.00899 * 111.00403 * 303.95452 * 6 4 2 24 24 H 1.09001 * 110.48198 * 142.28703 * 7 4 2 25 25 H 1.08995 * 110.48964 * 264.80084 * 7 4 2 26 26 H 1.09003 * 110.75700 * 203.73650 * 8 7 4 27 27 H 1.09002 * 110.75452 * 80.36901 * 8 7 4 28 28 H 0.96999 * 120.00699 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0571 -0.7541 -1.2334 5 1 2.6867 -0.0961 -1.8323 6 7 0.9329 -1.2479 -2.0397 7 6 2.8876 -1.9409 -0.7026 8 6 2.3282 -2.1897 0.7202 9 6 2.0585 -0.7548 1.2372 10 1 2.9799 -0.2978 1.5982 11 6 1.0184 -0.7739 2.3275 12 1 0.2519 -1.5348 2.3295 13 6 1.0453 0.1800 3.3227 14 7 1.9783 1.1068 3.3202 15 14 -0.2445 0.1567 4.6739 16 1 0.0030 1.2795 5.6137 17 1 -1.5942 0.3039 4.0724 18 1 -0.1678 -1.1310 5.4092 19 1 -0.3633 0.5887 0.8423 20 1 -0.3633 0.4350 -0.9310 21 1 -0.3632 -1.0238 0.0888 22 1 1.2625 -1.7450 -2.8535 23 1 0.3178 -1.8260 -1.4870 24 1 2.7403 -2.8202 -1.3296 25 1 3.9444 -1.6776 -0.6585 26 1 3.0677 -2.6924 1.3436 27 1 1.4033 -2.7648 0.6764 28 1 1.9974 1.7777 4.0205 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259967666.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:34 Heat of formation + Delta-G solvation = -37.551816 kcal Electronic energy + Delta-G solvation = -10248.507605 eV Core-core repulsion = 8490.605079 eV Total energy + Delta-G solvation = -1757.902527 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.81893 -34.96145 -32.76650 -31.60943 -28.40528 -25.94805 -25.29374 -21.02251 -19.85797 -18.03745 -17.38145 -16.53780 -15.89368 -15.33754 -14.39091 -14.07336 -13.56760 -13.43271 -13.04828 -12.75917 -12.52751 -12.39298 -12.22590 -11.58864 -11.26491 -11.17408 -10.80969 -10.69761 -10.42260 -9.37877 -8.08682 -6.13159 1.41194 1.42315 1.49401 2.45162 3.21167 3.86796 4.03340 4.10065 4.30427 4.70920 4.82383 4.91298 4.98104 5.05832 5.11542 5.22293 5.33983 5.37843 5.65717 5.68874 5.80716 5.91617 5.98135 6.43797 6.46766 6.82826 6.99470 7.50184 9.01496 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.069900 B = 0.015645 C = 0.014814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.476421 B = 1789.302298 C = 1889.592694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.083 4.083 3 H 0.022 0.978 4 C 0.096 3.904 5 H 0.071 0.929 6 N -0.837 5.837 7 C -0.147 4.147 8 C -0.112 4.112 9 C 0.030 3.970 10 H 0.013 0.987 11 C -0.501 4.501 12 H 0.053 0.947 13 C 0.007 3.993 14 N -0.932 5.932 15 Si 0.945 3.055 16 H -0.289 1.289 17 H -0.270 1.270 18 H -0.270 1.270 19 H 0.019 0.981 20 H 0.048 0.952 21 H 0.045 0.955 22 H 0.343 0.657 23 H 0.343 0.657 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.181 -5.235 -7.105 8.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.041 0.959 4 C -0.016 4.016 5 H 0.089 0.911 6 N -0.368 5.368 7 C -0.186 4.186 8 C -0.150 4.150 9 C 0.011 3.989 10 H 0.031 0.969 11 C -0.540 4.540 12 H 0.071 0.929 13 C -0.190 4.190 14 N -0.572 5.572 15 Si 0.771 3.229 16 H -0.214 1.214 17 H -0.195 1.195 18 H -0.195 1.195 19 H 0.038 0.962 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.156 0.844 23 H 0.157 0.843 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.327 -4.309 -7.103 8.413 hybrid contribution 0.032 -0.523 1.328 1.428 sum -1.295 -4.832 -5.775 7.640 Atomic orbital electron populations 1.21153 0.94916 1.00027 0.98131 1.21796 0.96709 0.97005 0.94718 0.95909 1.21960 0.91101 0.95140 0.93434 0.91091 1.59021 1.19412 1.46986 1.11368 1.23117 0.99816 0.98730 0.96947 1.22474 0.98963 0.98151 0.95406 1.19676 0.95360 0.91609 0.92246 0.96879 1.21314 1.12315 1.11641 1.08699 0.92920 1.25734 0.97529 0.95591 1.00170 1.70064 1.35297 1.16915 1.34972 0.85799 0.80108 0.77548 0.79402 1.21445 1.19526 1.19538 0.96156 0.93322 0.93622 0.84367 0.84313 0.90525 0.92074 0.93818 0.92709 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.64 6.99 71.98 0.50 -3.14 15 2 C -0.08 -3.70 3.42 -10.07 -0.03 -3.74 15 3 H 0.02 1.12 8.14 -2.38 -0.02 1.10 15 4 C 0.10 3.33 4.03 45.64 0.18 3.52 15 5 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 6 N -0.84 -24.51 7.95 -165.68 -1.32 -25.82 15 7 C -0.15 -4.82 6.52 31.67 0.21 -4.62 15 8 C -0.11 -4.55 6.32 31.89 0.20 -4.35 15 9 C 0.03 1.50 2.81 -10.46 -0.03 1.47 15 10 H 0.01 0.74 7.43 -2.39 -0.02 0.73 15 11 C -0.50 -27.32 6.08 25.60 0.16 -27.17 15 12 H 0.05 2.81 7.77 -2.91 -0.02 2.78 15 13 C 0.01 0.40 5.46 84.65 0.46 0.86 15 14 N -0.93 -56.11 12.86 21.45 0.28 -55.84 15 15 Si 0.95 44.35 29.54 68.60 2.03 46.37 15 16 H -0.29 -13.46 7.11 99.48 0.71 -12.75 15 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 15 18 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 19 H 0.02 0.96 7.34 -2.39 -0.02 0.94 15 20 H 0.05 1.89 7.65 -2.39 -0.02 1.88 15 21 H 0.04 1.84 6.82 -2.39 -0.02 1.83 15 22 H 0.34 7.95 9.06 -89.70 -0.81 7.14 15 23 H 0.34 10.11 7.25 -89.69 -0.65 9.46 15 24 H 0.08 2.07 8.03 -2.39 -0.02 2.05 15 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 15 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 15 27 H 0.05 2.14 8.03 -2.39 -0.02 2.13 15 28 H 0.26 14.88 8.31 -92.71 -0.77 14.11 15 Total: -1.00 -60.39 223.56 2.31 -58.08 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -0.32 Total: 14.36 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 1.65 Total: -37.16 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -1.04 Total: -81.66 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -60.39 2.31 -58.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259967666.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.526 kcal (2) G-P(sol) polarization free energy of solvation -60.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds