Wall clock time and date at job start Mon Mar 30 2020 02:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.47479 * 111.00130 * 2 1 4 4 C 1.53517 * 87.99753 * 221.26429 * 3 2 1 5 5 C 1.47486 * 111.00063 * 264.02774 * 2 1 3 6 6 H 1.08996 * 113.47515 * 23.87978 * 5 2 1 7 7 C 1.53005 * 113.47387 * 253.46966 * 5 2 1 8 8 C 1.52996 * 109.46905 * 84.50886 * 7 5 2 9 9 C 1.50707 * 109.47036 * 179.97438 * 8 7 5 10 10 H 1.07997 * 119.99559 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99690 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00424 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99549 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47133 * 90.00207 * 13 11 9 15 15 H 1.48502 * 109.47310 * 209.99902 * 13 11 9 16 16 H 1.48504 * 109.47231 * 330.00025 * 13 11 9 17 17 H 1.09002 * 109.47155 * 81.52479 * 1 2 3 18 18 H 1.09003 * 109.47502 * 201.52693 * 1 2 3 19 19 H 1.09002 * 109.47263 * 321.52505 * 1 2 3 20 20 H 1.09002 * 113.47562 * 336.06376 * 3 2 1 21 21 H 1.09003 * 113.47677 * 106.46979 * 3 2 1 22 22 H 1.08999 * 114.16585 * 139.69876 * 4 3 2 23 23 H 1.08992 * 114.17253 * 272.40659 * 4 3 2 24 24 H 1.09004 * 109.46531 * 204.50277 * 7 5 2 25 25 H 1.09000 * 109.47161 * 324.50142 * 7 5 2 26 26 H 1.09004 * 109.47028 * 299.99087 * 8 7 5 27 27 H 1.08995 * 109.47525 * 59.99293 * 8 7 5 28 28 H 0.97000 * 120.00194 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9975 1.3768 0.0000 4 6 3.0549 0.9134 -1.0119 5 6 1.9975 -0.1433 -1.3694 6 1 1.2996 0.1830 -2.1405 7 6 2.5887 -1.5257 -1.6530 8 6 1.4699 -2.4836 -2.0670 9 6 2.0523 -3.8451 -2.3470 10 1 3.1142 -4.0104 -2.2406 11 6 1.2293 -4.8796 -2.7388 12 7 -0.0638 -4.6781 -2.8688 13 14 1.9513 -6.5670 -3.0865 14 1 1.9533 -7.3713 -1.8382 15 1 1.1310 -7.2538 -4.1164 16 1 3.3435 -6.4174 -3.5812 17 1 -0.3633 0.1515 -1.0165 18 1 -0.3634 -0.9560 0.3771 19 1 -0.3634 0.8045 0.6394 20 1 1.3000 2.1097 -0.4056 21 1 2.4177 1.6806 0.9588 22 1 3.2564 1.6313 -1.8070 23 1 3.9580 0.5053 -0.5583 24 1 3.3190 -1.4501 -2.4587 25 1 3.0767 -1.9035 -0.7545 26 1 0.7396 -2.5592 -1.2613 27 1 0.9819 -2.1058 -2.9654 28 1 -0.6427 -5.4059 -3.1448 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259998493.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:54 Heat of formation + Delta-G solvation = 19.648038 kcal Electronic energy + Delta-G solvation = -9745.613593 eV Core-core repulsion = 7990.191438 eV Total energy + Delta-G solvation = -1755.422155 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.68839 -33.52227 -31.16921 -30.05400 -26.27387 -23.79507 -23.20724 -20.40154 -19.20593 -16.21284 -15.61903 -14.68724 -14.48043 -14.25275 -12.92084 -12.72683 -12.31568 -11.98867 -11.39895 -11.23605 -10.96809 -10.82746 -10.69696 -10.27706 -10.20495 -9.63808 -9.13978 -8.92020 -8.39301 -8.27282 -5.93180 -3.94766 3.36360 3.42012 3.45769 4.43183 4.51646 4.84447 5.14242 5.41514 5.42697 5.60971 5.76664 5.84880 5.88396 6.03931 6.18321 6.32597 6.45902 6.52063 6.88746 6.93371 7.26578 7.52019 7.76770 7.96472 8.08577 8.51851 9.12706 9.68712 11.18274 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.086726 B = 0.010616 C = 0.009843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.780077 B = 2636.862394 C = 2844.044821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.469 5.469 3 C -0.008 4.008 4 C -0.148 4.148 5 C 0.033 3.967 6 H 0.072 0.928 7 C -0.096 4.096 8 C 0.023 3.977 9 C -0.517 4.517 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 H 0.041 0.959 18 H 0.074 0.926 19 H 0.053 0.947 20 H 0.060 0.940 21 H 0.077 0.923 22 H 0.068 0.932 23 H 0.090 0.910 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.017 0.983 27 H 0.009 0.991 28 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.808 9.797 3.221 10.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 N -0.192 5.192 3 C -0.137 4.137 4 C -0.186 4.186 5 C -0.076 4.076 6 H 0.090 0.910 7 C -0.134 4.134 8 C -0.014 4.014 9 C -0.556 4.556 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.199 1.199 17 H 0.060 0.940 18 H 0.092 0.908 19 H 0.071 0.929 20 H 0.078 0.922 21 H 0.096 0.904 22 H 0.087 0.913 23 H 0.109 0.891 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.036 0.964 27 H 0.028 0.972 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.784 9.219 3.709 10.320 hybrid contribution -0.225 -0.438 -0.819 0.956 sum 2.558 8.781 2.890 9.592 Atomic orbital electron populations 1.22884 0.89856 1.02387 1.00644 1.68949 1.09113 1.17078 1.24067 1.23741 0.97488 0.92486 0.99962 1.23266 0.97931 0.98664 0.98702 1.23726 0.95818 0.97786 0.90239 0.91013 1.21557 0.99539 0.92166 1.00161 1.19071 0.93271 0.92973 0.96059 1.21302 0.93959 0.95253 1.45052 0.92756 1.25023 0.94849 0.98912 0.95746 1.69966 1.03351 1.32241 1.48196 0.86613 0.79064 0.84456 0.77976 1.20694 1.21308 1.19898 0.94011 0.90755 0.92860 0.92151 0.90424 0.91348 0.89143 0.92946 0.92346 0.96435 0.97227 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.14 10.06 60.06 0.60 0.46 15 2 N -0.47 -8.31 6.52 -244.53 -1.59 -9.91 15 3 C -0.01 -0.11 7.57 -7.54 -0.06 -0.16 15 4 C -0.15 -2.14 8.03 -26.10 -0.21 -2.34 15 5 C 0.03 0.60 2.99 -71.32 -0.21 0.39 15 6 H 0.07 1.31 7.36 -51.93 -0.38 0.93 15 7 C -0.10 -2.10 5.17 -26.73 -0.14 -2.24 15 8 C 0.02 0.63 4.97 -27.88 -0.14 0.49 15 9 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 15 10 H 0.05 1.55 7.74 -52.49 -0.41 1.15 15 11 C 0.06 1.63 5.46 -17.82 -0.10 1.54 15 12 N -0.90 -27.72 13.29 55.43 0.74 -26.98 15 13 Si 0.89 22.22 29.54 -169.99 -5.02 17.19 15 14 H -0.28 -6.91 7.11 56.52 0.40 -6.50 15 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 16 H -0.27 -6.67 7.11 56.52 0.40 -6.27 15 17 H 0.04 0.69 7.15 -51.93 -0.37 0.32 15 18 H 0.07 1.34 8.14 -51.93 -0.42 0.92 15 19 H 0.05 0.73 7.91 -51.93 -0.41 0.32 15 20 H 0.06 0.76 7.91 -51.93 -0.41 0.35 15 21 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.09 1.29 8.12 -51.93 -0.42 0.87 15 24 H 0.05 1.10 8.14 -51.93 -0.42 0.68 15 25 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 15 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 15 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 15 LS Contribution 235.52 15.07 3.55 3.55 Total: -1.00 -31.06 235.52 -7.39 -38.45 By element: Atomic # 1 Polarization: -0.41 SS G_CDS: -4.50 Total: -4.91 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -0.56 Total: -17.40 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.86 Total: -36.89 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.06 -7.39 -38.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998493.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.100 kcal (2) G-P(sol) polarization free energy of solvation -31.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds