Wall clock time and date at job start Mon Mar 30 2020 02:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.47479 * 111.00130 * 2 1 4 4 C 1.53517 * 87.99753 * 221.26429 * 3 2 1 5 5 C 1.47486 * 111.00063 * 264.02774 * 2 1 3 6 6 H 1.08996 * 113.47515 * 23.87978 * 5 2 1 7 7 C 1.53005 * 113.47387 * 253.46966 * 5 2 1 8 8 C 1.52996 * 109.46905 * 84.50886 * 7 5 2 9 9 C 1.50707 * 109.47036 * 179.97438 * 8 7 5 10 10 H 1.07997 * 119.99559 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99690 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00424 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99549 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47133 * 90.00207 * 13 11 9 15 15 H 1.48502 * 109.47310 * 209.99902 * 13 11 9 16 16 H 1.48504 * 109.47231 * 330.00025 * 13 11 9 17 17 H 1.09002 * 109.47155 * 81.52479 * 1 2 3 18 18 H 1.09003 * 109.47502 * 201.52693 * 1 2 3 19 19 H 1.09002 * 109.47263 * 321.52505 * 1 2 3 20 20 H 1.09002 * 113.47562 * 336.06376 * 3 2 1 21 21 H 1.09003 * 113.47677 * 106.46979 * 3 2 1 22 22 H 1.08999 * 114.16585 * 139.69876 * 4 3 2 23 23 H 1.08992 * 114.17253 * 272.40659 * 4 3 2 24 24 H 1.09004 * 109.46531 * 204.50277 * 7 5 2 25 25 H 1.09000 * 109.47161 * 324.50142 * 7 5 2 26 26 H 1.09004 * 109.47028 * 299.99087 * 8 7 5 27 27 H 1.08995 * 109.47525 * 59.99293 * 8 7 5 28 28 H 0.97000 * 120.00194 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9975 1.3768 0.0000 4 6 3.0549 0.9134 -1.0119 5 6 1.9975 -0.1433 -1.3694 6 1 1.2996 0.1830 -2.1405 7 6 2.5887 -1.5257 -1.6530 8 6 1.4699 -2.4836 -2.0670 9 6 2.0523 -3.8451 -2.3470 10 1 3.1142 -4.0104 -2.2406 11 6 1.2293 -4.8796 -2.7388 12 7 -0.0638 -4.6781 -2.8688 13 14 1.9513 -6.5670 -3.0865 14 1 1.9533 -7.3713 -1.8382 15 1 1.1310 -7.2538 -4.1164 16 1 3.3435 -6.4174 -3.5812 17 1 -0.3633 0.1515 -1.0165 18 1 -0.3634 -0.9560 0.3771 19 1 -0.3634 0.8045 0.6394 20 1 1.3000 2.1097 -0.4056 21 1 2.4177 1.6806 0.9588 22 1 3.2564 1.6313 -1.8070 23 1 3.9580 0.5053 -0.5583 24 1 3.3190 -1.4501 -2.4587 25 1 3.0767 -1.9035 -0.7545 26 1 0.7396 -2.5592 -1.2613 27 1 0.9819 -2.1058 -2.9654 28 1 -0.6427 -5.4059 -3.1448 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259998493.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:54 Heat of formation + Delta-G solvation = -2.438427 kcal Electronic energy + Delta-G solvation = -9746.571334 eV Core-core repulsion = 7990.191438 eV Total energy + Delta-G solvation = -1756.379896 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.99845 -35.66012 -33.13985 -31.41255 -28.17521 -25.07979 -24.97930 -22.25170 -20.55302 -18.45038 -16.93973 -16.52489 -16.03552 -15.75898 -14.52388 -14.38266 -14.10242 -13.71218 -13.11678 -12.81322 -12.76979 -12.33654 -12.27416 -11.97596 -11.76093 -11.52813 -11.23954 -10.73431 -10.55084 -9.73994 -8.19993 -6.31600 1.38727 1.40944 1.52042 2.40889 3.12472 3.16237 3.62221 3.92968 4.14922 4.37822 4.44515 4.56791 4.65320 4.75245 4.81136 4.96672 4.98818 5.06898 5.24237 5.33909 5.46487 5.53199 5.80740 5.86471 6.22967 6.27081 6.85760 7.37615 8.91791 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.086726 B = 0.010616 C = 0.009843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.780077 B = 2636.862394 C = 2844.044821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.498 5.498 3 C 0.001 3.999 4 C -0.131 4.131 5 C 0.024 3.976 6 H 0.067 0.933 7 C -0.085 4.085 8 C 0.031 3.969 9 C -0.546 4.546 10 H 0.059 0.941 11 C -0.003 4.003 12 N -0.935 5.935 13 Si 0.967 3.033 14 H -0.273 1.273 15 H -0.280 1.280 16 H -0.262 1.262 17 H 0.034 0.966 18 H 0.047 0.953 19 H 0.084 0.916 20 H 0.079 0.921 21 H 0.095 0.905 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.059 0.941 25 H 0.049 0.951 26 H -0.013 1.013 27 H -0.016 1.016 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.042 10.407 3.393 11.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 N -0.221 5.221 3 C -0.127 4.127 4 C -0.169 4.169 5 C -0.085 4.085 6 H 0.085 0.915 7 C -0.123 4.123 8 C -0.006 4.006 9 C -0.583 4.583 10 H 0.077 0.923 11 C -0.200 4.200 12 N -0.576 5.576 13 Si 0.791 3.209 14 H -0.198 1.198 15 H -0.206 1.206 16 H -0.186 1.186 17 H 0.053 0.947 18 H 0.066 0.934 19 H 0.103 0.897 20 H 0.098 0.902 21 H 0.114 0.886 22 H 0.113 0.887 23 H 0.111 0.889 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.005 0.995 27 H 0.003 0.997 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.028 9.847 3.889 11.327 hybrid contribution -0.646 -0.613 -0.859 1.237 sum 3.382 9.234 3.031 10.290 Atomic orbital electron populations 1.22834 0.89796 1.02130 1.00723 1.68882 1.09481 1.20274 1.23477 1.23804 0.97178 0.90773 1.00958 1.23224 0.97058 0.97237 0.99359 1.23687 0.97597 0.96546 0.90719 0.91501 1.21375 0.97821 0.93367 0.99730 1.18931 0.94100 0.93760 0.93791 1.21764 0.94419 0.96671 1.45492 0.92309 1.26022 0.95191 1.03586 0.95191 1.70105 1.04886 1.33820 1.48754 0.85420 0.78700 0.78652 0.78109 1.19831 1.20553 1.18574 0.94739 0.93417 0.89749 0.90239 0.88620 0.88741 0.88879 0.92226 0.93202 0.99497 0.99714 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.19 10.06 127.69 1.29 1.09 15 2 N -0.50 -17.14 6.52 -927.56 -6.05 -23.19 15 3 C 0.00 0.03 7.57 83.58 0.63 0.66 15 4 C -0.13 -3.40 8.03 31.01 0.25 -3.16 15 5 C 0.02 0.85 2.99 42.26 0.13 0.97 15 6 H 0.07 2.43 7.36 -2.39 -0.02 2.41 15 7 C -0.08 -3.74 5.17 30.59 0.16 -3.58 15 8 C 0.03 1.74 4.97 29.85 0.15 1.89 15 9 C -0.55 -32.61 9.11 25.60 0.23 -32.38 15 10 H 0.06 3.37 7.74 -2.91 -0.02 3.35 15 11 C 0.00 -0.15 5.46 84.65 0.46 0.31 15 12 N -0.94 -58.90 13.29 21.45 0.28 -58.62 15 13 Si 0.97 45.63 29.54 68.60 2.03 47.66 15 14 H -0.27 -12.47 7.11 99.48 0.71 -11.76 15 15 H -0.28 -12.81 7.11 99.48 0.71 -12.11 15 16 H -0.26 -11.73 7.11 99.48 0.71 -11.03 15 17 H 0.03 1.16 7.15 -2.39 -0.02 1.14 15 18 H 0.05 1.78 8.14 -2.39 -0.02 1.76 15 19 H 0.08 2.19 7.91 -2.39 -0.02 2.17 15 20 H 0.08 1.69 7.91 -2.39 -0.02 1.68 15 21 H 0.10 2.06 8.14 -2.39 -0.02 2.04 15 22 H 0.09 1.99 8.14 -2.39 -0.02 1.97 15 23 H 0.09 2.39 8.12 -2.39 -0.02 2.37 15 24 H 0.06 2.49 8.14 -2.38 -0.02 2.47 15 25 H 0.05 2.24 8.14 -2.39 -0.02 2.23 15 26 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 15 27 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 15 28 H 0.26 15.49 8.31 -92.71 -0.77 14.72 15 Total: -1.00 -67.37 235.52 0.66 -66.71 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 1.10 Total: 1.62 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 3.29 Total: -34.18 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -5.76 Total: -81.81 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -67.37 0.66 -66.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998493.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.271 kcal (2) G-P(sol) polarization free energy of solvation -67.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds