Wall clock time and date at job start Mon Mar 30 2020 01:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 110.06511 * 2 1 4 4 N 1.48130 * 109.99044 * 238.70680 * 2 1 3 5 5 C 1.48531 * 105.82452 * 266.07470 * 4 2 1 6 6 C 1.54937 * 103.22782 * 320.73966 * 5 4 2 7 7 C 1.53985 * 109.91882 * 121.21023 * 2 1 3 8 8 H 1.09003 * 110.31320 * 359.11045 * 7 2 1 9 9 C 1.50700 * 110.30856 * 237.04136 * 7 2 1 10 10 H 1.07999 * 119.99988 * 1.38768 * 9 7 2 11 11 C 1.37885 * 120.00047 * 181.38948 * 9 7 2 12 12 N 1.31518 * 119.99792 * 359.72305 * 11 9 7 13 13 Si 1.86795 * 120.00009 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47163 * 59.99902 * 13 11 9 15 15 H 1.48495 * 109.47159 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47290 * 299.99897 * 13 11 9 17 17 H 1.08999 * 109.47061 * 298.78651 * 1 2 3 18 18 H 1.08997 * 109.47601 * 58.79012 * 1 2 3 19 19 H 1.09004 * 109.47641 * 178.79234 * 1 2 3 20 20 H 1.09004 * 109.46968 * 181.20747 * 3 2 1 21 21 H 1.08999 * 109.47586 * 301.20755 * 3 2 1 22 22 H 1.09001 * 109.47347 * 61.21106 * 3 2 1 23 23 H 1.00899 * 110.95453 * 26.56790 * 4 2 1 24 24 H 1.09001 * 110.66806 * 202.30727 * 5 4 2 25 25 H 1.08996 * 110.80611 * 79.24483 * 5 4 2 26 26 H 1.09003 * 110.72199 * 279.05621 * 6 5 4 27 27 H 1.09001 * 110.87371 * 155.84041 * 6 5 4 28 28 H 0.97000 * 119.99468 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0549 1.4371 0.0000 4 7 2.0364 -0.7231 -1.1895 5 6 2.2668 -2.1217 -0.7457 6 6 2.8530 -1.9497 0.6781 7 6 2.0546 -0.7502 1.2382 8 1 1.2225 -1.1014 1.8485 9 6 2.9557 0.1450 2.0492 10 1 3.1279 1.1642 1.7363 11 6 3.5602 -0.3372 3.1908 12 7 3.3462 -1.5767 3.5748 13 14 4.6766 0.7726 4.1965 14 1 3.9072 1.9517 4.6687 15 1 5.1977 0.0212 5.3666 16 1 5.8119 1.2272 3.3540 17 1 -0.3633 0.4949 0.9007 18 1 -0.3634 0.5325 -0.8789 19 1 -0.3634 -1.0274 -0.0217 20 1 3.1446 1.4258 -0.0217 21 1 1.6794 1.9611 -0.8789 22 1 1.7147 1.9482 0.9006 23 1 1.3677 -0.6887 -1.9444 24 1 2.9831 -2.6196 -1.3991 25 1 1.3291 -2.6764 -0.7113 26 1 3.9169 -1.7171 0.6317 27 1 2.6807 -2.8424 1.2795 28 1 3.7718 -1.9160 4.3777 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260054443.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:55 Heat of formation + Delta-G solvation = -24.359635 kcal Electronic energy + Delta-G solvation = -10312.391615 eV Core-core repulsion = 8555.061144 eV Total energy + Delta-G solvation = -1757.330471 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.99517 -34.74533 -33.03137 -30.99507 -28.33050 -26.82862 -24.98432 -21.78244 -19.99068 -18.01046 -16.92449 -16.44253 -15.84296 -14.89137 -14.35939 -13.93686 -13.74680 -13.63025 -13.07501 -12.71004 -12.53418 -12.44321 -12.17368 -11.87360 -11.73381 -11.48645 -10.80940 -10.58969 -10.44732 -9.27137 -8.07723 -6.13613 1.42346 1.43724 1.50588 2.46591 3.24422 3.50680 4.14218 4.30881 4.40011 4.47509 4.63397 4.78557 4.89790 4.96152 5.11642 5.13869 5.24809 5.32661 5.47060 5.64795 5.68618 5.76191 5.91745 6.25553 6.44485 6.77982 6.95164 7.53197 9.02362 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.058733 B = 0.017731 C = 0.015624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.620221 B = 1578.812078 C = 1791.710483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.088 3.912 3 C -0.101 4.101 4 N -0.664 5.664 5 C 0.043 3.957 6 C -0.089 4.089 7 C 0.041 3.959 8 H -0.003 1.003 9 C -0.525 4.525 10 H 0.077 0.923 11 C 0.006 3.994 12 N -0.926 5.926 13 Si 0.949 3.051 14 H -0.269 1.269 15 H -0.289 1.289 16 H -0.273 1.273 17 H 0.052 0.948 18 H 0.073 0.927 19 H 0.045 0.955 20 H 0.042 0.958 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.337 0.663 24 H 0.080 0.920 25 H 0.040 0.960 26 H 0.031 0.969 27 H 0.034 0.966 28 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.523 2.291 -6.754 7.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.002 4.002 3 C -0.158 4.158 4 N -0.294 5.294 5 C -0.087 4.087 6 C -0.128 4.128 7 C 0.022 3.978 8 H 0.015 0.985 9 C -0.563 4.563 10 H 0.095 0.905 11 C -0.192 4.192 12 N -0.567 5.567 13 Si 0.775 3.225 14 H -0.195 1.195 15 H -0.215 1.215 16 H -0.198 1.198 17 H 0.071 0.929 18 H 0.092 0.908 19 H 0.064 0.936 20 H 0.062 0.938 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.153 0.847 24 H 0.099 0.901 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.781 2.408 -6.587 7.544 hybrid contribution -0.225 -0.241 1.103 1.151 sum -3.006 2.168 -5.484 6.618 Atomic orbital electron populations 1.22303 0.95626 1.01133 1.02228 1.21758 0.92653 0.95290 0.90503 1.21550 1.00408 0.94309 0.99563 1.63166 1.47890 1.10465 1.07855 1.22992 0.99016 0.90276 0.96373 1.22189 0.98591 0.98363 0.93633 1.19521 0.93886 0.92826 0.91584 0.98494 1.21970 1.27185 0.99238 1.07938 0.90470 1.25803 0.98340 0.96240 0.98814 1.70116 1.45199 1.16388 1.24976 0.85744 0.79493 0.79110 0.78128 1.19458 1.21484 1.19803 0.92930 0.90804 0.93552 0.93846 0.92952 0.93263 0.84688 0.90126 0.94216 0.95031 0.94755 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 8.26 71.98 0.59 -4.63 15 2 C 0.09 3.58 1.16 3.62 0.00 3.58 15 3 C -0.10 -3.94 7.34 71.98 0.53 -3.41 15 4 N -0.66 -24.38 7.03 -458.68 -3.22 -27.60 15 5 C 0.04 1.62 7.54 86.65 0.65 2.27 15 6 C -0.09 -4.36 5.67 31.80 0.18 -4.18 15 7 C 0.04 2.07 2.53 -10.66 -0.03 2.05 15 8 H 0.00 -0.17 7.69 -2.39 -0.02 -0.19 15 9 C -0.53 -28.95 7.52 25.60 0.19 -28.75 15 10 H 0.08 4.09 4.70 -2.91 -0.01 4.08 15 11 C 0.01 0.32 5.33 84.66 0.45 0.77 15 12 N -0.93 -55.22 12.52 21.45 0.27 -54.95 15 13 Si 0.95 44.54 29.54 68.60 2.03 46.56 15 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 15 H -0.29 -13.45 7.11 99.48 0.71 -12.75 15 16 H -0.27 -12.50 7.11 99.48 0.71 -11.79 15 17 H 0.05 1.84 8.14 -2.39 -0.02 1.82 15 18 H 0.07 2.03 8.14 -2.39 -0.02 2.01 15 19 H 0.05 1.53 8.14 -2.39 -0.02 1.51 15 20 H 0.04 1.86 7.04 -2.39 -0.02 1.85 15 21 H 0.05 1.71 8.14 -2.39 -0.02 1.69 15 22 H 0.05 1.97 7.19 -2.39 -0.02 1.95 15 23 H 0.34 10.11 8.44 -89.70 -0.76 9.36 15 24 H 0.08 2.76 8.14 -2.39 -0.02 2.74 15 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 15 26 H 0.03 1.67 7.86 -2.39 -0.02 1.65 15 27 H 0.03 1.77 8.08 -2.39 -0.02 1.75 15 28 H 0.26 14.67 8.31 -92.71 -0.77 13.90 15 Total: -1.00 -60.83 223.89 2.02 -58.81 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.37 Total: 9.49 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 2.58 Total: -32.31 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -2.95 Total: -82.55 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -60.83 2.02 -58.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260054443.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.452 kcal (2) G-P(sol) polarization free energy of solvation -60.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds