Wall clock time and date at job start Mon Mar 30 2020 01:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48496 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47108 * 300.00052 * 3 2 1 6 6 H 1.48496 * 109.47054 * 59.99706 * 3 2 1 7 7 C 1.37878 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00453 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99598 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.67290 * 59.29779 * 9 7 2 11 11 C 1.54887 * 110.75589 * 296.05989 * 9 7 2 12 12 C 1.54757 * 103.96441 * 203.67003 * 11 9 7 13 13 C 1.53872 * 106.65180 * 23.57130 * 12 11 9 14 14 H 1.08995 * 110.03240 * 240.72419 * 13 12 11 15 15 C 1.53001 * 110.07640 * 119.31669 * 13 12 11 16 16 N 1.46896 * 109.47124 * 67.80502 * 15 13 12 17 17 C 1.54265 * 106.59766 * 0.02562 * 13 12 11 18 18 H 0.97001 * 120.00131 * 359.97438 * 1 2 3 19 19 H 1.08998 * 110.49004 * 322.23904 * 11 9 7 20 20 H 1.09001 * 110.48617 * 84.88414 * 11 9 7 21 21 H 1.08996 * 110.00094 * 264.27075 * 12 11 9 22 22 H 1.09008 * 110.05485 * 142.89417 * 12 11 9 23 23 H 1.08998 * 109.47644 * 187.81076 * 15 13 12 24 24 H 1.09009 * 109.46936 * 307.80768 * 15 13 12 25 25 H 1.00903 * 110.99663 * 180.02562 * 16 15 13 26 26 H 1.00896 * 111.00049 * 303.95557 * 16 15 13 27 27 H 1.09005 * 110.48489 * 217.71127 * 17 13 12 28 28 H 1.08999 * 110.49056 * 95.07011 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6079 -2.5722 -0.8766 11 6 0.4250 -2.6561 1.3013 12 6 0.2372 -4.1857 1.4423 13 6 1.3842 -4.8450 0.6565 14 1 0.9804 -5.4629 -0.1455 15 6 2.2410 -5.6980 1.5942 16 7 1.4598 -6.8531 2.0561 17 6 2.2298 -3.6980 0.0656 18 1 -0.4850 0.8400 0.0004 19 1 0.9763 -2.2589 2.1536 20 1 -0.5392 -2.1572 1.2035 21 1 -0.7231 -4.4838 1.0218 22 1 0.2903 -4.4737 2.4923 23 1 3.1255 -6.0471 1.0614 24 1 2.5465 -5.0993 2.4524 25 1 2.0040 -7.4323 2.6777 26 1 0.6020 -6.5565 2.4969 27 1 2.5808 -3.9582 -0.9331 28 1 3.0715 -3.4687 0.7190 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260061126.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:39 Heat of formation + Delta-G solvation = -28.848915 kcal Electronic energy + Delta-G solvation = -9904.054282 eV Core-core repulsion = 8146.529142 eV Total energy + Delta-G solvation = -1757.525140 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.68789 -33.94205 -32.02891 -28.12164 -27.92470 -24.25072 -22.63815 -19.16644 -18.67062 -16.30635 -15.62218 -14.98802 -14.52119 -13.74051 -13.12135 -12.48702 -12.28477 -11.78458 -11.51294 -10.98246 -10.67958 -10.44748 -10.11205 -9.69621 -9.65517 -9.47980 -9.03229 -8.71014 -8.47354 -8.31605 -5.95899 -3.98292 3.31949 3.39917 3.43966 4.47672 4.85348 5.35126 5.48231 5.49780 5.80407 6.04794 6.15323 6.25242 6.50226 6.69326 6.75535 6.90450 6.97247 7.08433 7.34031 7.38192 7.45788 7.62776 7.77510 7.96299 8.10240 8.52372 9.04923 9.65496 11.13777 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.095852 B = 0.011787 C = 0.011129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 292.045454 B = 2374.855150 C = 2515.278364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.049 3.951 10 H 0.030 0.970 11 C -0.101 4.101 12 C -0.122 4.122 13 C -0.091 4.091 14 H 0.066 0.934 15 C 0.069 3.931 16 N -0.854 5.854 17 C -0.112 4.112 18 H 0.258 0.742 19 H 0.043 0.957 20 H 0.065 0.935 21 H 0.049 0.951 22 H 0.039 0.961 23 H 0.064 0.936 24 H 0.025 0.975 25 H 0.332 0.668 26 H 0.339 0.661 27 H 0.045 0.955 28 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 -7.357 3.531 8.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.030 3.970 10 H 0.048 0.952 11 C -0.140 4.140 12 C -0.160 4.160 13 C -0.110 4.110 14 H 0.084 0.916 15 C -0.062 4.062 16 N -0.383 5.383 17 C -0.150 4.150 18 H 0.068 0.932 19 H 0.062 0.938 20 H 0.083 0.917 21 H 0.067 0.933 22 H 0.057 0.943 23 H 0.083 0.917 24 H 0.043 0.957 25 H 0.143 0.857 26 H 0.152 0.848 27 H 0.064 0.936 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.901 -7.439 2.756 8.158 hybrid contribution 0.546 1.359 1.026 1.788 sum 2.447 -6.081 3.783 7.568 Atomic orbital electron populations 1.69974 1.05884 1.26199 1.50922 1.24988 0.94824 0.98982 0.95234 0.86602 0.80194 0.84093 0.77500 1.19828 1.21092 1.21133 1.21211 0.92818 0.90660 1.50295 0.92705 1.19570 0.92358 0.91331 0.93715 0.95233 1.22380 1.01287 0.90581 0.99719 1.22382 0.97201 0.98921 0.97452 1.21823 0.96096 0.95985 0.97122 0.91592 1.21933 0.96190 0.90573 0.97473 1.58824 1.09546 1.22517 1.47423 1.22493 0.98613 0.95569 0.98374 0.93222 0.93799 0.91658 0.93252 0.94269 0.91733 0.95672 0.85685 0.84827 0.93638 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 12.20 55.43 0.68 -25.42 15 2 C 0.06 1.72 5.35 -17.82 -0.10 1.63 15 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 15 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.28 -6.88 7.11 56.52 0.40 -6.47 15 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 7 C -0.51 -14.35 8.52 -34.44 -0.29 -14.64 15 8 H 0.05 1.52 7.78 -52.49 -0.41 1.11 15 9 C 0.05 1.24 2.76 -89.77 -0.25 1.00 15 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 11 C -0.10 -2.42 5.70 -24.81 -0.14 -2.56 15 12 C -0.12 -2.36 5.98 -25.35 -0.15 -2.51 15 13 C -0.09 -1.70 3.15 -89.50 -0.28 -1.98 15 14 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 15 C 0.07 1.08 5.89 -3.83 -0.02 1.06 15 16 N -0.85 -11.68 9.62 -10.37 -0.10 -11.78 15 17 C -0.11 -2.39 5.77 -25.06 -0.14 -2.54 15 18 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 19 H 0.04 1.08 8.04 -51.93 -0.42 0.66 15 20 H 0.06 1.69 7.48 -51.93 -0.39 1.30 15 21 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 22 H 0.04 0.68 6.97 -51.92 -0.36 0.32 15 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 24 H 0.03 0.40 8.14 -51.92 -0.42 -0.02 15 25 H 0.33 3.72 9.08 -39.29 -0.36 3.36 15 26 H 0.34 4.46 7.76 -39.29 -0.31 4.15 15 27 H 0.04 0.93 8.14 -51.93 -0.42 0.51 15 28 H 0.05 1.13 7.76 -51.93 -0.40 0.73 15 LS Contribution 227.83 15.07 3.43 3.43 Total: -1.00 -28.91 227.83 -6.70 -35.61 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.31 Total: 2.14 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -1.38 Total: -20.55 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.58 Total: -37.20 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -28.91 -6.70 -35.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061126.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.764 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds