Wall clock time and date at job start Mon Mar 30 2020 01:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48496 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47108 * 300.00052 * 3 2 1 6 6 H 1.48496 * 109.47054 * 59.99706 * 3 2 1 7 7 C 1.37878 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00453 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99598 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.67290 * 59.29779 * 9 7 2 11 11 C 1.54887 * 110.75589 * 296.05989 * 9 7 2 12 12 C 1.54757 * 103.96441 * 203.67003 * 11 9 7 13 13 C 1.53872 * 106.65180 * 23.57130 * 12 11 9 14 14 H 1.08995 * 110.03240 * 240.72419 * 13 12 11 15 15 C 1.53001 * 110.07640 * 119.31669 * 13 12 11 16 16 N 1.46896 * 109.47124 * 67.80502 * 15 13 12 17 17 C 1.54265 * 106.59766 * 0.02562 * 13 12 11 18 18 H 0.97001 * 120.00131 * 359.97438 * 1 2 3 19 19 H 1.08998 * 110.49004 * 322.23904 * 11 9 7 20 20 H 1.09001 * 110.48617 * 84.88414 * 11 9 7 21 21 H 1.08996 * 110.00094 * 264.27075 * 12 11 9 22 22 H 1.09008 * 110.05485 * 142.89417 * 12 11 9 23 23 H 1.08998 * 109.47644 * 187.81076 * 15 13 12 24 24 H 1.09009 * 109.46936 * 307.80768 * 15 13 12 25 25 H 1.00903 * 110.99663 * 180.02562 * 16 15 13 26 26 H 1.00896 * 111.00049 * 303.95557 * 16 15 13 27 27 H 1.09005 * 110.48489 * 217.71127 * 17 13 12 28 28 H 1.08999 * 110.49056 * 95.07011 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6079 -2.5722 -0.8766 11 6 0.4250 -2.6561 1.3013 12 6 0.2372 -4.1857 1.4423 13 6 1.3842 -4.8450 0.6565 14 1 0.9804 -5.4629 -0.1455 15 6 2.2410 -5.6980 1.5942 16 7 1.4598 -6.8531 2.0561 17 6 2.2298 -3.6980 0.0656 18 1 -0.4850 0.8400 0.0004 19 1 0.9763 -2.2589 2.1536 20 1 -0.5392 -2.1572 1.2035 21 1 -0.7231 -4.4838 1.0218 22 1 0.2903 -4.4737 2.4923 23 1 3.1255 -6.0471 1.0614 24 1 2.5465 -5.0993 2.4524 25 1 2.0040 -7.4323 2.6777 26 1 0.6020 -6.5565 2.4969 27 1 2.5808 -3.9582 -0.9331 28 1 3.0715 -3.4687 0.7190 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260061126.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:39 Heat of formation + Delta-G solvation = -48.216454 kcal Electronic energy + Delta-G solvation = -9904.894122 eV Core-core repulsion = 8146.529142 eV Total energy + Delta-G solvation = -1758.364980 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.33800 -35.54205 -33.89211 -29.93318 -29.59763 -26.17957 -24.14561 -21.10459 -20.26418 -18.31562 -17.03741 -16.60699 -16.33392 -15.20326 -14.89269 -14.06041 -13.87700 -13.50880 -13.29801 -12.95622 -12.66334 -12.32557 -11.70771 -11.45860 -11.38372 -11.20913 -10.93909 -10.78731 -10.46424 -9.56413 -8.11833 -6.21912 1.39502 1.40947 1.52821 2.43349 3.18671 3.69753 3.99800 4.02583 4.26158 4.62201 4.63676 4.82119 4.83808 4.99515 5.13560 5.19370 5.27001 5.35785 5.43492 5.65114 5.66790 5.95238 6.01042 6.27517 6.40161 6.67517 6.89641 7.45721 8.97387 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.095852 B = 0.011787 C = 0.011129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 292.045454 B = 2374.855150 C = 2515.278364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.009 3.991 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.036 3.964 10 H -0.004 1.004 11 C -0.096 4.096 12 C -0.111 4.111 13 C -0.084 4.084 14 H 0.068 0.932 15 C 0.077 3.923 16 N -0.854 5.854 17 C -0.105 4.105 18 H 0.260 0.740 19 H 0.030 0.970 20 H 0.035 0.965 21 H 0.054 0.946 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.025 0.975 25 H 0.349 0.651 26 H 0.343 0.657 27 H 0.050 0.950 28 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.966 -8.192 4.199 9.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.570 4.570 8 H 0.071 0.929 9 C 0.017 3.983 10 H 0.014 0.986 11 C -0.134 4.134 12 C -0.149 4.149 13 C -0.102 4.102 14 H 0.086 0.914 15 C -0.054 4.054 16 N -0.385 5.385 17 C -0.143 4.143 18 H 0.069 0.931 19 H 0.049 0.951 20 H 0.053 0.947 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.092 0.908 24 H 0.043 0.957 25 H 0.163 0.837 26 H 0.157 0.843 27 H 0.069 0.931 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.801 -8.295 3.433 9.404 hybrid contribution 0.247 1.612 0.793 1.814 sum 3.048 -6.683 4.226 8.474 Atomic orbital electron populations 1.70104 1.07333 1.27084 1.51639 1.25804 0.95682 1.02554 0.94873 0.85554 0.79153 0.79668 0.77590 1.18984 1.20649 1.20598 1.21590 0.92988 0.92176 1.50294 0.92890 1.19588 0.93091 0.92511 0.93079 0.98610 1.22187 0.99072 0.93850 0.98290 1.22275 0.97988 0.95246 0.99351 1.21715 0.95581 0.95312 0.97639 0.91398 1.21752 0.95961 0.90815 0.96855 1.58744 1.09788 1.21694 1.48306 1.22366 0.97989 0.94852 0.99106 0.93147 0.95089 0.94652 0.92692 0.91751 0.90834 0.95716 0.83746 0.84336 0.93138 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.11 12.20 21.45 0.26 -54.85 15 2 C 0.01 0.52 5.35 84.66 0.45 0.98 15 3 Si 0.95 44.47 29.54 68.60 2.03 46.50 15 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 15 6 H -0.28 -12.75 7.11 99.48 0.71 -12.05 15 7 C -0.53 -30.25 8.52 25.60 0.22 -30.03 15 8 H 0.05 2.95 7.78 -2.91 -0.02 2.92 15 9 C 0.04 1.86 2.76 -10.24 -0.03 1.83 15 10 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 15 11 C -0.10 -4.62 5.70 31.84 0.18 -4.44 15 12 C -0.11 -4.13 5.98 31.49 0.19 -3.94 15 13 C -0.08 -2.93 3.15 -10.07 -0.03 -2.97 15 14 H 0.07 2.38 8.14 -2.39 -0.02 2.36 15 15 C 0.08 2.19 5.89 86.30 0.51 2.70 15 16 N -0.85 -20.40 9.62 -186.72 -1.80 -22.19 15 17 C -0.10 -4.39 5.77 31.67 0.18 -4.21 15 18 H 0.26 14.69 8.31 -92.71 -0.77 13.92 15 19 H 0.03 1.53 8.04 -2.39 -0.02 1.51 15 20 H 0.03 1.88 7.48 -2.39 -0.02 1.86 15 21 H 0.05 1.98 8.14 -2.39 -0.02 1.96 15 22 H 0.06 2.07 6.97 -2.38 -0.02 2.06 15 23 H 0.07 1.99 8.14 -2.39 -0.02 1.97 15 24 H 0.02 0.71 8.14 -2.38 -0.02 0.69 15 25 H 0.35 6.54 9.08 -89.69 -0.81 5.72 15 26 H 0.34 7.83 7.76 -89.70 -0.70 7.13 15 27 H 0.05 2.02 8.14 -2.38 -0.02 2.00 15 28 H 0.05 2.27 7.76 -2.39 -0.02 2.25 15 Total: -1.00 -61.70 227.83 1.79 -59.91 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -0.37 Total: 10.72 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: 1.67 Total: -40.08 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -1.54 Total: -77.04 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -61.70 1.79 -59.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061126.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.689 kcal (2) G-P(sol) polarization free energy of solvation -61.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds