Wall clock time and date at job start Mon Mar 30 2020 01:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.94912 * 2 1 4 4 C 1.54845 * 111.11262 * 124.09842 * 2 1 3 5 5 N 1.47604 * 101.89579 * 94.75234 * 4 2 1 6 6 C 1.28635 * 108.54505 * 14.95052 * 5 4 2 7 7 C 1.50707 * 122.93600 * 180.40434 * 6 5 4 8 8 C 1.50694 * 109.47050 * 0.02562 * 7 6 5 9 9 H 1.08000 * 120.00077 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99817 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99692 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99995 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47011 * 59.99955 * 12 10 8 14 14 H 1.48492 * 109.47114 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46869 * 300.00118 * 12 10 8 16 16 O 1.34596 * 114.12553 * 0.41288 * 6 5 4 17 17 H 1.09001 * 109.47416 * 179.29667 * 1 2 3 18 18 H 1.08998 * 109.47327 * 299.29991 * 1 2 3 19 19 H 1.08999 * 109.47012 * 59.30009 * 1 2 3 20 20 H 1.09000 * 110.94443 * 212.90197 * 4 2 1 21 21 H 1.08999 * 110.94641 * 336.60216 * 4 2 1 22 22 H 1.09001 * 109.46804 * 120.00477 * 7 6 5 23 23 H 1.08997 * 109.47030 * 240.00277 * 7 6 5 24 24 H 0.97003 * 119.99338 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9197 1.0180 0.0000 4 6 2.0877 -0.8098 1.1962 5 7 2.3090 -2.1367 0.5886 6 6 2.2663 -2.0129 -0.6911 7 6 2.4443 -3.1757 -1.6331 8 6 2.6680 -4.4364 -0.8384 9 1 2.6804 -4.3993 0.2409 10 6 2.8567 -5.6372 -1.4892 11 7 2.8410 -5.6824 -2.8034 12 14 3.1347 -7.1999 -0.5040 13 1 1.9620 -7.4474 0.3728 14 1 3.3087 -8.3458 -1.4323 15 1 4.3536 -7.0486 0.3305 16 8 2.0488 -0.7542 -1.1151 17 1 -0.3634 -1.0276 -0.0126 18 1 -0.3634 0.5029 0.8962 19 1 -0.3633 0.5247 -0.8836 20 1 3.0254 -0.3831 1.5522 21 1 1.3566 -0.8675 2.0025 22 1 1.5499 -3.2869 -2.2462 23 1 3.3053 -2.9937 -2.2763 24 1 2.9735 -6.5273 -3.2612 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260381553.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:46 Heat of formation + Delta-G solvation = -21.968477 kcal Electronic energy + Delta-G solvation = -9574.033744 eV Core-core repulsion = 7680.973867 eV Total energy + Delta-G solvation = -1893.059877 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.52203 -33.62610 -32.71855 -31.78114 -28.90600 -25.56963 -23.31832 -21.58583 -19.19349 -16.31916 -16.06017 -15.31756 -14.72043 -14.24376 -13.57595 -12.58465 -12.32625 -12.14118 -11.87331 -11.51344 -11.07979 -11.00240 -10.72202 -10.56702 -9.89462 -9.53170 -8.94322 -8.50935 -8.20156 -6.02283 -4.02083 3.07987 3.39778 3.42016 3.46870 3.98126 4.51870 4.77841 5.11311 5.17460 5.35936 5.43198 5.65149 5.82353 5.93921 5.99430 6.26992 6.62284 7.20934 7.34437 7.38934 8.02158 8.20549 8.77960 9.09957 9.61668 11.10087 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.084921 B = 0.012254 C = 0.011409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.639787 B = 2284.497075 C = 2453.692295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.038 3.962 3 H 0.106 0.894 4 C -0.010 4.010 5 N -0.540 5.540 6 C 0.322 3.678 7 C 0.083 3.917 8 C -0.509 4.509 9 H 0.081 0.919 10 C 0.054 3.946 11 N -0.901 5.901 12 Si 0.904 3.096 13 H -0.276 1.276 14 H -0.289 1.289 15 H -0.276 1.276 16 O -0.353 6.353 17 H 0.064 0.936 18 H 0.069 0.931 19 H 0.064 0.936 20 H 0.077 0.923 21 H 0.088 0.912 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.976 8.668 4.434 10.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.021 4.021 3 H 0.124 0.876 4 C -0.140 4.140 5 N -0.276 5.276 6 C 0.098 3.902 7 C 0.046 3.954 8 C -0.547 4.547 9 H 0.099 0.901 10 C -0.146 4.146 11 N -0.541 5.541 12 Si 0.732 3.268 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.202 1.202 16 O -0.258 6.258 17 H 0.083 0.917 18 H 0.088 0.912 19 H 0.083 0.917 20 H 0.095 0.905 21 H 0.106 0.894 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.815 8.085 4.785 9.807 hybrid contribution -0.029 -0.008 0.216 0.218 sum -2.844 8.077 5.001 9.916 Atomic orbital electron populations 1.22125 0.94312 1.03315 1.02325 1.24063 0.95009 0.96852 0.86129 0.87615 1.24124 1.00798 0.90872 0.98188 1.74962 1.26820 1.19020 1.06750 1.26952 0.85911 0.84564 0.92777 1.18195 0.99414 0.85729 0.92089 1.21154 1.48693 0.90386 0.94459 0.90094 1.25009 0.95389 0.99282 0.94949 1.69956 1.50395 1.26586 1.07125 0.86449 0.78898 0.81877 0.79552 1.20179 1.21443 1.20151 1.87029 1.78223 1.22010 1.38531 0.91681 0.91173 0.91677 0.90467 0.89421 0.93020 0.93034 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.57 37.16 0.36 -1.90 14 2 C 0.04 0.60 4.44 -25.76 -0.11 0.49 14 3 H 0.11 1.37 8.14 -51.93 -0.42 0.95 14 4 C -0.01 -0.17 7.69 -2.46 -0.02 -0.19 14 5 N -0.54 -12.44 10.20 -56.98 -0.58 -13.02 14 6 C 0.32 7.58 7.63 -13.61 -0.10 7.47 14 7 C 0.08 2.20 5.60 -29.03 -0.16 2.04 14 8 C -0.51 -14.59 8.95 -34.44 -0.31 -14.90 14 9 H 0.08 2.36 6.77 -52.49 -0.36 2.00 14 10 C 0.05 1.56 5.46 -17.82 -0.10 1.46 14 11 N -0.90 -26.64 13.29 55.43 0.74 -25.90 14 12 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 14 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 14 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 14 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 14 16 O -0.35 -7.34 10.90 -15.56 -0.17 -7.51 14 17 H 0.06 1.04 8.14 -51.93 -0.42 0.62 14 18 H 0.07 0.77 8.14 -51.93 -0.42 0.34 14 19 H 0.06 0.83 8.14 -51.93 -0.42 0.40 14 20 H 0.08 1.23 8.14 -51.93 -0.42 0.81 14 21 H 0.09 1.35 7.92 -51.93 -0.41 0.94 14 22 H 0.05 1.40 8.14 -51.93 -0.42 0.98 14 23 H 0.05 1.40 8.14 -51.93 -0.42 0.98 14 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 14 LS Contribution 214.57 15.07 3.23 3.23 Total: -1.00 -30.59 214.57 -5.11 -35.70 By element: Atomic # 1 Polarization: -1.16 SS G_CDS: -2.86 Total: -4.02 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -0.45 Total: -5.54 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.15 Total: -38.92 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.17 Total: -7.51 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -30.59 -5.11 -35.70 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260381553.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.732 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds