Wall clock time and date at job start Mon Mar 30 2020 01:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.94655 * 2 1 4 4 C 1.54847 * 111.08119 * 235.92689 * 2 1 3 5 5 N 1.47595 * 101.89558 * 265.22630 * 4 2 1 6 6 C 1.28642 * 108.54754 * 345.04222 * 5 4 2 7 7 C 1.50697 * 122.93830 * 179.59276 * 6 5 4 8 8 C 1.50701 * 109.47515 * 359.97438 * 7 6 5 9 9 H 1.08003 * 119.99895 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00581 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99588 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00273 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47149 * 60.00002 * 12 10 8 14 14 H 1.48503 * 109.46850 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47181 * 300.00102 * 12 10 8 16 16 O 1.34649 * 114.14252 * 359.63098 * 6 5 4 17 17 H 1.09000 * 109.46633 * 180.69899 * 1 2 3 18 18 H 1.08996 * 109.47130 * 300.69871 * 1 2 3 19 19 H 1.08996 * 109.47246 * 60.70275 * 1 2 3 20 20 H 1.09006 * 110.94048 * 23.37336 * 4 2 1 21 21 H 1.08999 * 110.94665 * 147.07185 * 4 2 1 22 22 H 1.09005 * 109.47211 * 119.97673 * 7 6 5 23 23 H 1.09001 * 109.47445 * 239.97834 * 7 6 5 24 24 H 0.96998 * 120.00177 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9197 1.0180 0.0000 4 6 2.0870 -0.8095 -1.1968 5 7 2.3086 -2.1365 -0.5898 6 6 2.2669 -2.0131 0.6900 7 6 2.4455 -3.1761 1.6316 8 6 2.6684 -4.4367 0.8363 9 1 2.6792 -4.3995 -0.2430 10 6 2.8585 -5.6376 1.4865 11 7 2.8459 -5.6828 2.8008 12 14 3.1341 -7.2001 0.5008 13 1 4.3512 -7.0490 -0.3366 14 1 3.3115 -8.3459 1.4287 15 1 1.9594 -7.4476 -0.3734 16 8 2.0489 -0.7543 1.1152 17 1 -0.3632 -1.0276 0.0125 18 1 -0.3633 0.5246 0.8836 19 1 -0.3633 0.5029 -0.8962 20 1 1.3552 -0.8669 -2.0026 21 1 3.0244 -0.3826 -1.5534 22 1 3.3072 -2.9946 2.2739 23 1 1.5517 -3.2873 2.2455 24 1 2.9793 -6.5277 3.2584 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260381556.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:47 Heat of formation + Delta-G solvation = -45.446418 kcal Electronic energy + Delta-G solvation = -9574.831920 eV Core-core repulsion = 7680.753963 eV Total energy + Delta-G solvation = -1894.077957 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.07481 -35.63697 -34.34378 -33.40680 -30.72701 -27.15428 -25.31007 -22.97931 -20.90633 -18.32076 -17.72810 -16.98761 -16.29476 -16.12800 -14.90735 -14.40862 -14.18698 -13.56580 -13.41509 -13.07960 -12.78536 -12.67345 -12.36879 -12.27410 -11.91661 -11.50759 -10.75832 -10.61445 -9.89808 -8.20975 -6.28726 1.32964 1.44354 1.47935 1.56083 2.35949 2.58604 3.14709 3.36427 3.83936 3.92649 4.11915 4.44673 4.56076 4.71532 4.86461 5.09403 5.14327 5.18187 5.25081 5.47912 5.80953 6.08454 6.83284 7.09120 7.39445 8.91920 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.084915 B = 0.012253 C = 0.011408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.660754 B = 2284.583688 C = 2453.799837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.033 3.967 3 H 0.145 0.855 4 C -0.014 4.014 5 N -0.566 5.566 6 C 0.314 3.686 7 C 0.086 3.914 8 C -0.527 4.527 9 H 0.074 0.926 10 C 0.005 3.995 11 N -0.932 5.932 12 Si 0.972 3.028 13 H -0.271 1.271 14 H -0.279 1.279 15 H -0.270 1.270 16 O -0.367 6.367 17 H 0.035 0.965 18 H 0.075 0.925 19 H 0.106 0.894 20 H 0.110 0.890 21 H 0.094 0.906 22 H 0.033 0.967 23 H 0.035 0.965 24 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.255 9.350 -5.815 11.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.023 4.023 3 H 0.162 0.838 4 C -0.143 4.143 5 N -0.303 5.303 6 C 0.089 3.911 7 C 0.048 3.952 8 C -0.565 4.565 9 H 0.092 0.908 10 C -0.193 4.193 11 N -0.572 5.572 12 Si 0.796 3.204 13 H -0.196 1.196 14 H -0.204 1.204 15 H -0.195 1.195 16 O -0.272 6.272 17 H 0.055 0.945 18 H 0.094 0.906 19 H 0.124 0.876 20 H 0.128 0.872 21 H 0.112 0.888 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.101 8.792 -6.170 11.180 hybrid contribution 0.034 -0.114 0.172 0.210 sum -3.067 8.678 -5.998 10.985 Atomic orbital electron populations 1.22148 0.92675 1.02123 1.04705 1.24509 0.96425 0.97646 0.83755 0.83774 1.24322 1.02510 0.88471 0.98957 1.74837 1.25755 1.22950 1.06735 1.26207 0.87434 0.84985 0.92493 1.17882 0.97873 0.87079 0.92339 1.21377 1.49121 0.91661 0.94314 0.90790 1.25879 0.94833 1.02574 0.95999 1.70061 1.50849 1.27627 1.08625 0.85398 0.78976 0.77805 0.78196 1.19565 1.20441 1.19492 1.87007 1.78517 1.21077 1.40560 0.94533 0.90585 0.87588 0.87161 0.88751 0.94867 0.94722 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 9.56 71.98 0.69 -3.27 14 2 C 0.03 0.97 4.44 31.23 0.14 1.11 14 3 H 0.14 3.12 8.14 -2.39 -0.02 3.10 14 4 C -0.01 -0.44 7.69 86.80 0.67 0.23 14 5 N -0.57 -25.75 10.20 -449.37 -4.59 -30.33 14 6 C 0.31 14.88 7.63 88.57 0.68 15.56 14 7 C 0.09 4.70 5.60 29.10 0.16 4.87 14 8 C -0.53 -30.76 8.95 25.60 0.23 -30.53 14 9 H 0.07 4.35 6.77 -2.91 -0.02 4.33 14 10 C 0.01 0.29 5.46 84.65 0.46 0.76 14 11 N -0.93 -55.79 13.29 21.45 0.28 -55.51 14 12 Si 0.97 45.21 29.54 68.60 2.03 47.23 14 13 H -0.27 -12.27 7.11 99.48 0.71 -11.57 14 14 H -0.28 -12.47 7.11 99.48 0.71 -11.76 14 15 H -0.27 -12.20 7.11 99.48 0.71 -11.50 14 16 O -0.37 -14.99 10.91 -79.14 -0.86 -15.86 14 17 H 0.04 1.11 8.14 -2.39 -0.02 1.09 14 18 H 0.08 1.72 8.14 -2.39 -0.02 1.70 14 19 H 0.11 1.87 8.14 -2.39 -0.02 1.85 14 20 H 0.11 3.03 7.92 -2.38 -0.02 3.01 14 21 H 0.09 2.72 8.14 -2.39 -0.02 2.70 14 22 H 0.03 1.90 8.14 -2.38 -0.02 1.88 14 23 H 0.03 1.97 8.14 -2.39 -0.02 1.95 14 24 H 0.27 14.99 8.31 -92.71 -0.77 14.22 14 Total: -1.00 -65.80 214.57 1.06 -64.73 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: 1.18 Total: 1.00 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 3.02 Total: -11.28 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -4.30 Total: -85.84 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.86 Total: -15.86 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -65.80 1.06 -64.73 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260381556.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.288 kcal (2) G-P(sol) polarization free energy of solvation -65.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds