Wall clock time and date at job start Mon Mar 30 2020 02:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46537 * 2 1 4 4 C 1.50700 * 109.47051 * 240.00123 * 2 1 3 5 5 H 1.07998 * 120.00261 * 240.00313 * 4 2 1 6 6 C 1.37878 * 120.00010 * 59.99985 * 4 2 1 7 7 N 1.31514 * 119.99983 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99917 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47267 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47064 * 119.99997 * 8 6 4 11 11 H 1.48504 * 109.46881 * 239.99830 * 8 6 4 12 12 C 1.52999 * 109.47145 * 120.00211 * 2 1 3 13 13 C 1.53932 * 113.73192 * 276.72817 * 12 2 1 14 14 N 1.47959 * 86.18045 * 221.92193 * 13 12 2 15 15 C 1.46902 * 110.99905 * 137.58303 * 14 13 12 16 16 C 1.47957 * 90.76368 * 24.69138 * 14 13 12 17 17 H 1.09004 * 109.47494 * 60.00382 * 1 2 3 18 18 H 1.09003 * 109.47040 * 179.97438 * 1 2 3 19 19 H 1.08992 * 109.47268 * 299.99864 * 1 2 3 20 20 H 0.97003 * 119.99852 * 180.02562 * 7 6 4 21 21 H 1.08998 * 113.00868 * 48.36472 * 12 2 1 22 22 H 1.09004 * 113.75969 * 336.23988 * 13 12 2 23 23 H 1.08999 * 113.76302 * 107.60444 * 13 12 2 24 24 H 1.08998 * 109.47397 * 320.63889 * 15 14 13 25 25 H 1.09002 * 109.47461 * 80.64419 * 15 14 13 26 26 H 1.09007 * 109.46963 * 200.63814 * 15 14 13 27 27 H 1.09000 * 113.75975 * 220.99328 * 16 14 13 28 28 H 1.09001 * 113.86215 * 89.63937 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1474 -2.2863 -3.6039 10 1 1.1678 -1.5865 -4.8165 11 1 3.1472 -0.1856 -4.8161 12 6 2.0400 -0.7213 1.2492 13 6 2.0909 0.1711 2.5024 14 7 3.3952 -0.4684 2.7838 15 6 4.3807 0.5228 3.2358 16 6 3.5751 -0.7784 1.3483 17 1 -0.3634 0.5138 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8899 20 1 0.7081 1.1609 -3.4844 21 1 1.5536 -1.6826 1.4145 22 1 2.1625 1.2359 2.2808 23 1 1.3206 -0.0605 3.2380 24 1 4.2613 1.4418 2.6621 25 1 4.2260 0.7324 4.2942 26 1 5.3863 0.1294 3.0866 27 1 3.9907 -1.7687 1.1616 28 1 4.0809 0.0075 0.7874 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260431939.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:46 Heat of formation + Delta-G solvation = 21.361727 kcal Electronic energy + Delta-G solvation = -9987.062814 eV Core-core repulsion = 8231.714970 eV Total energy + Delta-G solvation = -1755.347844 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.21933 -34.05090 -31.12200 -28.47709 -25.81121 -24.63637 -23.40369 -20.17744 -18.62662 -16.31213 -15.07537 -14.90297 -14.11780 -14.04166 -12.99891 -12.36519 -12.03958 -11.89393 -11.38478 -11.09393 -10.88075 -10.68909 -10.39305 -10.14267 -9.98320 -9.56624 -9.21473 -8.67366 -8.31321 -8.17069 -5.95408 -4.01536 3.30804 3.39059 3.43091 4.45604 4.60296 5.33743 5.37623 5.54737 5.65237 5.79645 6.07464 6.12277 6.21227 6.28452 6.50184 6.75788 6.82040 6.87637 7.01189 7.28503 7.38966 7.63446 7.76495 8.01331 8.17948 8.49369 9.02661 9.63266 11.10339 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.064847 B = 0.013821 C = 0.012351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.684016 B = 2025.372202 C = 2266.542745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.050 3.950 3 H 0.024 0.976 4 C -0.506 4.506 5 H 0.056 0.944 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.888 3.112 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C -0.095 4.095 13 C 0.000 4.000 14 N -0.497 5.497 15 C -0.009 4.009 16 C 0.016 3.984 17 H 0.080 0.920 18 H 0.025 0.975 19 H 0.006 0.994 20 H 0.258 0.742 21 H 0.080 0.920 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.032 0.968 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.971 -0.566 6.187 6.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.031 3.969 3 H 0.042 0.958 4 C -0.544 4.544 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.717 3.283 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 C -0.114 4.114 13 C -0.129 4.129 14 N -0.219 5.219 15 C -0.158 4.158 16 C -0.112 4.112 17 H 0.099 0.901 18 H 0.044 0.956 19 H 0.025 0.975 20 H 0.068 0.932 21 H 0.099 0.901 22 H 0.082 0.918 23 H 0.092 0.908 24 H 0.050 0.950 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.969 -0.966 6.558 7.264 hybrid contribution 0.386 0.336 -1.417 1.507 sum 3.355 -0.631 5.141 6.171 Atomic orbital electron populations 1.21764 0.98738 0.98909 0.99903 1.18705 0.92624 0.95145 0.90415 0.95833 1.21200 1.30636 1.12177 0.90432 0.92562 1.24977 0.95201 0.95029 0.98963 1.69904 1.37060 1.23136 1.23057 0.86590 0.78643 0.79748 0.83348 1.19785 1.21110 1.21162 1.23029 0.94483 0.98736 0.95123 1.24087 0.92441 0.97869 0.98511 1.68440 1.02799 1.31546 1.19151 1.22805 0.97312 0.95156 1.00555 1.23837 0.98752 1.01313 0.87277 0.90097 0.95621 0.97485 0.93196 0.90132 0.91751 0.90752 0.94961 0.92119 0.92070 0.90624 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.97 37.16 0.33 -2.96 15 2 C 0.05 1.24 2.07 -91.77 -0.19 1.05 15 3 H 0.02 0.64 7.94 -51.93 -0.41 0.22 15 4 C -0.51 -13.75 8.13 -34.44 -0.28 -14.03 15 5 H 0.06 1.51 7.54 -52.49 -0.40 1.12 15 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 15 7 N -0.89 -25.62 11.32 55.43 0.63 -24.99 15 8 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 15 9 H -0.27 -6.46 7.11 56.52 0.40 -6.05 15 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 15 12 C -0.09 -2.00 3.26 -89.69 -0.29 -2.29 15 13 C 0.00 -0.01 7.52 -2.77 -0.02 -0.03 15 14 N -0.50 -8.98 6.56 -246.61 -1.62 -10.60 15 15 C -0.01 -0.14 9.65 60.07 0.58 0.44 15 16 C 0.02 0.32 6.87 -2.77 -0.02 0.30 15 17 H 0.08 2.17 6.07 -51.93 -0.32 1.86 15 18 H 0.02 0.59 8.14 -51.93 -0.42 0.17 15 19 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 15 20 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 21 H 0.08 1.71 8.14 -51.93 -0.42 1.29 15 22 H 0.06 1.19 7.43 -51.93 -0.39 0.80 15 23 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 24 H 0.03 0.49 7.62 -51.93 -0.40 0.10 15 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 26 H 0.06 0.86 8.14 -51.92 -0.42 0.43 15 27 H 0.08 1.44 8.14 -51.93 -0.42 1.02 15 28 H 0.07 1.42 7.88 -51.93 -0.41 1.01 15 LS Contribution 230.29 15.07 3.47 3.47 Total: -1.00 -28.05 230.29 -6.93 -34.98 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -4.41 Total: -3.17 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 0.02 Total: -15.97 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: -0.99 Total: -35.59 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -28.05 -6.93 -34.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260431939.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.344 kcal (2) G-P(sol) polarization free energy of solvation -28.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds