Wall clock time and date at job start Mon Mar 30 2020 02:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47228 * 2 1 4 4 C 1.50695 * 109.47498 * 239.99357 * 2 1 3 5 5 H 1.07992 * 120.00619 * 240.00575 * 4 2 1 6 6 C 1.37876 * 119.99629 * 59.99939 * 4 2 1 7 7 N 1.31515 * 120.00164 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00045 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47239 * 60.00429 * 8 6 4 10 10 H 1.48500 * 109.47405 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47374 * 300.00340 * 8 6 4 12 12 C 1.53000 * 109.46676 * 119.99564 * 2 1 3 13 13 H 1.09004 * 110.46087 * 62.41253 * 12 2 1 14 14 C 1.54381 * 110.41540 * 300.00000 * 12 2 1 15 15 C 1.54257 * 105.14978 * 217.42327 * 14 12 2 16 16 C 1.54377 * 105.06382 * 359.94367 * 15 14 12 17 17 N 1.48567 * 104.59159 * 23.85582 * 16 15 14 18 18 H 1.08999 * 109.46434 * 60.00026 * 1 2 3 19 19 H 1.08994 * 109.47557 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47089 * 300.00372 * 1 2 3 21 21 H 0.97004 * 120.00269 * 179.97438 * 7 6 4 22 22 H 1.09002 * 110.32526 * 98.47145 * 14 12 2 23 23 H 1.08998 * 110.32190 * 336.36786 * 14 12 2 24 24 H 1.08995 * 110.32672 * 118.84838 * 15 14 12 25 25 H 1.09013 * 110.32172 * 240.94943 * 15 14 12 26 26 H 1.08999 * 110.41555 * 142.63458 * 16 15 14 27 27 H 1.09004 * 110.41760 * 264.96131 * 16 15 14 28 28 H 1.00902 * 110.99892 * 200.96033 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9436 0.8300 -2.6034 8 14 2.3215 -1.1206 -4.0077 9 1 1.8259 -2.5205 -4.0075 10 1 1.8271 -0.4203 -5.2203 11 1 3.8065 -1.1213 -4.0080 12 6 2.0399 -0.7212 1.2493 13 1 1.7210 -1.7635 1.2445 14 6 1.5373 -0.0104 2.5243 15 6 2.7087 -0.0997 3.5240 16 6 3.8221 -0.8587 2.7707 17 7 3.5222 -0.6332 1.3332 18 1 -0.3632 0.5138 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 0.7096 1.1616 -3.4844 22 1 0.6604 -0.5212 2.9218 23 1 1.3022 1.0319 2.3088 24 1 3.0496 0.8986 3.7980 25 1 2.4061 -0.6530 4.4132 26 1 4.7999 -0.4489 3.0239 27 1 3.7839 -1.9223 3.0065 28 1 3.9595 -1.3373 0.7578 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260432035.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:51 Heat of formation + Delta-G solvation = -13.561323 kcal Electronic energy + Delta-G solvation = -10036.891890 eV Core-core repulsion = 8280.029669 eV Total energy + Delta-G solvation = -1756.862221 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.94590 -33.76618 -30.79410 -29.63188 -26.61725 -24.98277 -21.55694 -20.40091 -18.64892 -16.48918 -15.62980 -14.88626 -14.14588 -13.41987 -12.62064 -12.21974 -11.96179 -11.49861 -11.17730 -11.12812 -10.84400 -10.69936 -10.49374 -10.13628 -10.01714 -9.77149 -9.12796 -8.67112 -8.24617 -7.69424 -5.87778 -3.92603 3.37425 3.41874 3.44247 4.51574 4.98104 5.29843 5.40723 5.44819 5.62665 5.89907 6.04306 6.22701 6.36943 6.40190 6.53608 6.79358 6.89569 6.99715 7.14413 7.43507 7.61053 7.81871 8.02403 8.24567 8.29707 8.56615 9.08919 9.70240 11.18393 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.069394 B = 0.014266 C = 0.012462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.394711 B = 1962.267568 C = 2246.345223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.057 3.943 3 H 0.034 0.966 4 C -0.501 4.501 5 H 0.049 0.951 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.889 3.111 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.278 1.278 12 C 0.080 3.920 13 H 0.031 0.969 14 C -0.121 4.121 15 C -0.124 4.124 16 C 0.031 3.969 17 N -0.652 5.652 18 H 0.082 0.918 19 H 0.021 0.979 20 H 0.008 0.992 21 H 0.258 0.742 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.026 0.974 28 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.928 -2.688 7.775 8.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.038 3.962 3 H 0.052 0.948 4 C -0.540 4.540 5 H 0.067 0.933 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.717 3.283 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.030 4.030 13 H 0.049 0.951 14 C -0.159 4.159 15 C -0.162 4.162 16 C -0.099 4.099 17 N -0.280 5.280 18 H 0.101 0.899 19 H 0.040 0.960 20 H 0.027 0.973 21 H 0.068 0.932 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.045 0.955 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.924 -1.828 7.616 8.065 hybrid contribution 0.160 -1.519 -0.769 1.710 sum 2.083 -3.348 6.847 7.901 Atomic orbital electron populations 1.21821 0.98871 0.98688 1.00141 1.18614 0.91646 0.96195 0.89708 0.94780 1.21058 1.30362 1.11808 0.90737 0.93291 1.24935 0.95313 0.95062 0.98809 1.69876 1.37179 1.23047 1.23125 0.86719 0.79203 0.79637 0.82729 1.20564 1.21431 1.20368 1.22697 0.86716 0.97231 0.96321 0.95059 1.22383 0.96532 1.01658 0.95323 1.22282 0.96144 1.00174 0.97600 1.22881 0.98588 0.97088 0.91294 1.63676 1.08662 1.51990 1.03711 0.89912 0.95960 0.97262 0.93162 0.92599 0.91241 0.91790 0.92541 0.91333 0.95539 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.74 37.16 0.32 -3.05 15 2 C 0.06 1.46 1.95 -91.77 -0.18 1.29 15 3 H 0.03 0.98 8.14 -51.93 -0.42 0.55 15 4 C -0.50 -13.94 8.27 -34.44 -0.28 -14.22 15 5 H 0.05 1.33 7.43 -52.49 -0.39 0.94 15 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 15 7 N -0.89 -26.19 11.32 55.43 0.63 -25.56 15 8 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 15 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 12 C 0.08 1.71 2.64 -65.98 -0.17 1.54 15 13 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 14 C -0.12 -2.22 5.47 -25.35 -0.14 -2.36 15 15 C -0.12 -1.93 7.00 -25.35 -0.18 -2.11 15 16 C 0.03 0.51 7.47 -2.18 -0.02 0.50 15 17 N -0.65 -13.19 7.08 -102.63 -0.73 -13.92 15 18 H 0.08 2.25 6.07 -51.93 -0.32 1.94 15 19 H 0.02 0.52 8.14 -51.93 -0.42 0.10 15 20 H 0.01 0.19 7.10 -51.93 -0.37 -0.18 15 21 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 23 H 0.07 1.34 7.61 -51.93 -0.40 0.94 15 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.06 0.76 8.14 -51.92 -0.42 0.33 15 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 15 28 H 0.34 6.66 8.53 -39.29 -0.34 6.33 15 LS Contribution 226.26 15.07 3.41 3.41 Total: -1.00 -28.98 226.26 -6.77 -35.75 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.32 Total: 0.46 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -0.74 Total: -16.84 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: -0.10 Total: -39.48 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -28.98 -6.77 -35.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260432035.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.190 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds