Wall clock time and date at job start Mon Mar 30 2020 02:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47228 * 2 1 4 4 C 1.50695 * 109.47498 * 239.99357 * 2 1 3 5 5 H 1.07992 * 120.00619 * 240.00575 * 4 2 1 6 6 C 1.37876 * 119.99629 * 59.99939 * 4 2 1 7 7 N 1.31515 * 120.00164 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00045 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47239 * 60.00429 * 8 6 4 10 10 H 1.48500 * 109.47405 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47374 * 300.00340 * 8 6 4 12 12 C 1.53000 * 109.46676 * 119.99564 * 2 1 3 13 13 H 1.09004 * 110.46087 * 62.41253 * 12 2 1 14 14 C 1.54381 * 110.41540 * 300.00000 * 12 2 1 15 15 C 1.54257 * 105.14978 * 217.42327 * 14 12 2 16 16 C 1.54377 * 105.06382 * 359.94367 * 15 14 12 17 17 N 1.48567 * 104.59159 * 23.85582 * 16 15 14 18 18 H 1.08999 * 109.46434 * 60.00026 * 1 2 3 19 19 H 1.08994 * 109.47557 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47089 * 300.00372 * 1 2 3 21 21 H 0.97004 * 120.00269 * 179.97438 * 7 6 4 22 22 H 1.09002 * 110.32526 * 98.47145 * 14 12 2 23 23 H 1.08998 * 110.32190 * 336.36786 * 14 12 2 24 24 H 1.08995 * 110.32672 * 118.84838 * 15 14 12 25 25 H 1.09013 * 110.32172 * 240.94943 * 15 14 12 26 26 H 1.08999 * 110.41555 * 142.63458 * 16 15 14 27 27 H 1.09004 * 110.41760 * 264.96131 * 16 15 14 28 28 H 1.00902 * 110.99892 * 200.96033 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9436 0.8300 -2.6034 8 14 2.3215 -1.1206 -4.0077 9 1 1.8259 -2.5205 -4.0075 10 1 1.8271 -0.4203 -5.2203 11 1 3.8065 -1.1213 -4.0080 12 6 2.0399 -0.7212 1.2493 13 1 1.7210 -1.7635 1.2445 14 6 1.5373 -0.0104 2.5243 15 6 2.7087 -0.0997 3.5240 16 6 3.8221 -0.8587 2.7707 17 7 3.5222 -0.6332 1.3332 18 1 -0.3632 0.5138 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 0.7096 1.1616 -3.4844 22 1 0.6604 -0.5212 2.9218 23 1 1.3022 1.0319 2.3088 24 1 3.0496 0.8986 3.7980 25 1 2.4061 -0.6530 4.4132 26 1 4.7999 -0.4489 3.0239 27 1 3.7839 -1.9223 3.0065 28 1 3.9595 -1.3373 0.7578 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260432035.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:51 Heat of formation + Delta-G solvation = -33.049078 kcal Electronic energy + Delta-G solvation = -10037.736942 eV Core-core repulsion = 8280.029669 eV Total energy + Delta-G solvation = -1757.707273 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.49530 -35.73047 -32.77553 -31.08154 -28.23947 -27.09888 -23.35777 -21.78687 -20.39070 -18.43368 -17.30625 -16.73013 -15.78889 -15.09343 -14.45335 -13.90109 -13.60918 -13.12567 -12.97155 -12.84560 -12.73240 -12.29741 -12.21748 -12.04586 -11.77093 -11.38670 -10.96642 -10.70790 -10.39549 -9.25025 -8.02647 -6.14818 1.42593 1.44407 1.51386 2.46773 3.23441 3.56907 3.93479 4.06783 4.27862 4.44554 4.75222 4.81974 4.89180 4.99341 5.06328 5.10762 5.18349 5.26562 5.34387 5.50000 5.65141 5.88093 6.08922 6.32880 6.41711 6.64355 6.95521 7.51646 9.02254 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.069394 B = 0.014266 C = 0.012462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.394711 B = 1962.267568 C = 2246.345223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.055 3.945 3 H -0.007 1.007 4 C -0.516 4.516 5 H 0.050 0.950 6 C 0.006 3.994 7 N -0.923 5.923 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.081 3.919 13 H 0.028 0.972 14 C -0.120 4.120 15 C -0.118 4.118 16 C 0.031 3.969 17 N -0.674 5.674 18 H 0.052 0.948 19 H 0.025 0.975 20 H 0.032 0.968 21 H 0.258 0.742 22 H 0.072 0.928 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.043 0.957 28 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.483 -3.696 8.821 9.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.037 3.963 3 H 0.011 0.989 4 C -0.554 4.554 5 H 0.068 0.932 6 C -0.191 4.191 7 N -0.563 5.563 8 Si 0.779 3.221 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.028 4.028 13 H 0.046 0.954 14 C -0.158 4.158 15 C -0.155 4.155 16 C -0.098 4.098 17 N -0.302 5.302 18 H 0.071 0.929 19 H 0.044 0.956 20 H 0.051 0.949 21 H 0.067 0.933 22 H 0.091 0.909 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.061 0.939 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.486 -2.843 8.679 9.465 hybrid contribution 0.001 -1.185 -1.068 1.595 sum 2.487 -4.027 7.612 8.963 Atomic orbital electron populations 1.21657 0.98379 0.98695 0.99826 1.18547 0.92140 0.94174 0.91480 0.98861 1.21426 1.30202 1.11892 0.91884 0.93179 1.25745 0.95616 0.95841 1.01924 1.70027 1.38249 1.24378 1.23645 0.85691 0.78714 0.78704 0.78970 1.19677 1.21240 1.19840 1.22493 0.87874 0.96648 0.95800 0.95397 1.22346 0.98401 1.00406 0.94667 1.22296 0.94461 1.01077 0.97711 1.23001 0.99662 0.98443 0.88682 1.63622 1.07718 1.52478 1.06420 0.92871 0.95587 0.94894 0.93290 0.90898 0.92793 0.91149 0.89483 0.89752 0.93858 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.31 8.74 71.98 0.63 -5.69 15 2 C 0.06 2.88 1.95 -11.54 -0.02 2.86 15 3 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 15 4 C -0.52 -28.92 8.27 25.60 0.21 -28.71 15 5 H 0.05 2.72 7.43 -2.91 -0.02 2.70 15 6 C 0.01 0.35 5.30 84.65 0.45 0.80 15 7 N -0.92 -55.15 11.32 21.45 0.24 -54.91 15 8 Si 0.95 44.70 29.54 68.60 2.03 46.73 15 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 10 H -0.29 -13.26 7.11 99.48 0.71 -12.56 15 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 15 12 C 0.08 3.43 2.64 45.03 0.12 3.55 15 13 H 0.03 1.19 8.14 -2.38 -0.02 1.17 15 14 C -0.12 -4.17 5.47 31.49 0.17 -4.00 15 15 C -0.12 -3.28 7.00 31.49 0.22 -3.06 15 16 C 0.03 0.93 7.47 86.45 0.65 1.57 15 17 N -0.67 -26.52 7.08 -478.60 -3.39 -29.91 15 18 H 0.05 2.95 6.07 -2.39 -0.01 2.93 15 19 H 0.02 1.21 8.14 -2.39 -0.02 1.19 15 20 H 0.03 1.42 7.10 -2.39 -0.02 1.40 15 21 H 0.26 14.73 8.31 -92.71 -0.77 13.96 15 22 H 0.07 2.26 8.14 -2.39 -0.02 2.24 15 23 H 0.05 2.02 7.61 -2.39 -0.02 2.00 15 24 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 25 H 0.09 1.93 8.14 -2.38 -0.02 1.91 15 26 H 0.08 2.24 8.14 -2.39 -0.02 2.22 15 27 H 0.04 1.15 8.14 -2.39 -0.02 1.13 15 28 H 0.33 12.98 8.53 -89.69 -0.76 12.22 15 Total: -1.00 -61.83 226.26 1.67 -60.16 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.36 Total: 10.60 kcal Atomic # 6 Polarization: -35.09 SS G_CDS: 2.42 Total: -32.67 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -3.14 Total: -84.82 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -61.83 1.67 -60.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260432035.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.112 kcal (2) G-P(sol) polarization free energy of solvation -61.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds