Wall clock time and date at job start Mon Mar 30 2020 02:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46906 * 109.47182 * 2 1 4 4 C 1.47956 * 110.99793 * 70.64360 * 3 2 1 5 5 C 1.53933 * 86.18208 * 137.58296 * 4 3 2 6 6 C 1.47960 * 110.99920 * 170.00121 * 3 2 1 7 7 H 1.09004 * 113.86146 * 336.74637 * 6 3 2 8 8 C 1.53001 * 113.75769 * 108.09997 * 6 3 2 9 9 C 1.50694 * 109.47168 * 291.06491 * 8 6 3 10 10 H 1.08000 * 120.00563 * 0.02562 * 9 8 6 11 11 C 1.37885 * 119.99902 * 180.02562 * 9 8 6 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46985 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47276 * 299.99832 * 13 11 9 16 16 H 1.48498 * 109.47150 * 60.00043 * 13 11 9 17 17 H 1.09000 * 109.46613 * 299.99979 * 1 2 3 18 18 H 1.08996 * 109.46711 * 59.99875 * 1 2 3 19 19 H 1.08996 * 109.46668 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47440 * 240.00349 * 2 1 3 21 21 H 1.08997 * 109.47595 * 119.99901 * 2 1 3 22 22 H 1.09000 * 113.76026 * 23.26037 * 4 3 2 23 23 H 1.09006 * 113.75582 * 251.89930 * 4 3 2 24 24 H 1.09003 * 113.73432 * 221.91790 * 5 4 3 25 25 H 1.09000 * 113.83019 * 90.64409 * 5 4 3 26 26 H 1.09007 * 109.46922 * 171.06193 * 8 6 3 27 27 H 1.09003 * 109.46836 * 51.06949 * 8 6 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7648 2.0375 1.3032 5 6 3.1839 2.6196 1.1730 6 6 3.4790 1.4315 0.2398 7 1 3.8692 0.5542 0.7559 8 6 4.2955 1.8079 -0.9982 9 6 4.2278 0.6880 -2.0042 10 1 3.6589 -0.2031 -1.7830 11 6 4.8921 0.8008 -3.2071 12 7 5.5844 1.8860 -3.4768 13 14 4.8087 -0.5878 -4.4538 14 1 5.6011 -0.2224 -5.6555 15 1 5.3636 -1.8270 -3.8525 16 1 3.3947 -0.8176 -4.8450 17 1 -0.3632 0.5138 0.8900 18 1 -0.3632 0.5138 -0.8900 19 1 -0.3632 -1.0277 -0.0005 20 1 1.8934 -0.5138 -0.8900 21 1 1.8934 -0.5138 0.8899 22 1 1.6517 1.3368 2.1305 23 1 0.9768 2.7900 1.2709 24 1 3.7533 2.5997 2.1023 25 1 3.2185 3.5882 0.6742 26 1 5.3335 1.9765 -0.7113 27 1 3.8881 2.7177 -1.4392 28 1 6.0520 1.9651 -4.3229 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260437690.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:37 Heat of formation + Delta-G solvation = 19.063656 kcal Electronic energy + Delta-G solvation = -9917.513434 eV Core-core repulsion = 8162.065938 eV Total energy + Delta-G solvation = -1755.447496 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.22599 -32.99770 -32.11815 -29.04670 -26.60163 -24.54233 -21.91724 -21.01316 -18.70502 -16.20101 -15.53414 -14.88449 -14.25161 -13.71281 -13.29609 -12.49001 -12.13834 -11.70061 -11.36634 -11.18834 -11.00787 -10.84748 -10.63117 -10.41641 -10.08533 -9.86555 -9.16104 -8.91034 -8.27394 -7.93268 -5.90820 -3.90802 3.38073 3.42217 3.44736 4.52011 4.63364 5.24945 5.38495 5.45481 5.58837 5.63582 5.79451 5.93092 6.11254 6.13792 6.24845 6.32444 6.50447 6.52384 6.67314 6.94737 7.20975 7.66578 7.72935 8.05764 8.12882 8.52158 9.13043 9.70844 11.20826 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.052168 B = 0.014833 C = 0.012077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.594390 B = 1887.177826 C = 2317.930256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.018 3.982 3 N -0.461 5.461 4 C -0.007 4.007 5 C -0.150 4.150 6 C 0.048 3.952 7 H 0.061 0.939 8 C 0.039 3.961 9 C -0.504 4.504 10 H 0.052 0.948 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.889 3.111 14 H -0.288 1.288 15 H -0.279 1.279 16 H -0.278 1.278 17 H 0.046 0.954 18 H 0.061 0.939 19 H 0.050 0.950 20 H 0.083 0.917 21 H 0.026 0.974 22 H 0.055 0.945 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.020 0.980 27 H 0.026 0.974 28 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.356 -1.780 7.586 10.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 N -0.184 5.184 4 C -0.136 4.136 5 C -0.187 4.187 6 C -0.060 4.060 7 H 0.079 0.921 8 C 0.001 3.999 9 C -0.543 4.543 10 H 0.070 0.930 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.717 3.283 14 H -0.214 1.214 15 H -0.205 1.205 16 H -0.203 1.203 17 H 0.065 0.935 18 H 0.080 0.920 19 H 0.069 0.931 20 H 0.102 0.898 21 H 0.044 0.956 22 H 0.073 0.927 23 H 0.094 0.906 24 H 0.076 0.924 25 H 0.105 0.895 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.530 -1.450 6.834 9.563 hybrid contribution 0.236 -1.285 -0.043 1.307 sum -6.295 -2.735 6.791 9.655 Atomic orbital electron populations 1.21715 0.95894 1.00657 1.01838 1.22574 0.95260 0.92157 1.01034 1.68612 1.08392 1.13936 1.27507 1.23831 0.98127 0.98814 0.92835 1.23473 0.95560 1.00319 0.99388 1.23610 0.89313 0.95390 0.97714 0.92137 1.18989 0.93519 0.97294 0.90052 1.21088 1.29722 1.02575 1.00898 0.92960 1.24988 0.95659 0.95683 0.98209 1.69949 1.32995 1.26943 1.23948 0.86710 0.78012 0.82603 0.80963 1.21367 1.20453 1.20331 0.93502 0.92034 0.93111 0.89825 0.95574 0.92660 0.90550 0.92359 0.89525 0.96162 0.95601 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.98 37.16 0.37 -1.80 15 2 C 0.02 0.34 5.47 -3.82 -0.02 0.32 15 3 N -0.46 -9.34 6.00 -230.69 -1.38 -10.72 15 4 C -0.01 -0.11 7.10 -2.77 -0.02 -0.13 15 5 C -0.15 -2.65 7.85 -25.80 -0.20 -2.85 15 6 C 0.05 1.04 3.19 -66.65 -0.21 0.82 15 7 H 0.06 1.28 7.80 -51.93 -0.40 0.87 15 8 C 0.04 1.03 5.02 -27.89 -0.14 0.89 15 9 C -0.50 -14.48 9.05 -34.44 -0.31 -14.79 15 10 H 0.05 1.46 6.20 -52.49 -0.33 1.14 15 11 C 0.05 1.61 5.46 -17.82 -0.10 1.51 15 12 N -0.90 -27.53 13.29 55.43 0.74 -26.79 15 13 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 15 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 17 H 0.05 0.65 7.54 -51.93 -0.39 0.25 15 18 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 19 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 20 H 0.08 1.71 6.68 -51.93 -0.35 1.37 15 21 H 0.03 0.45 7.69 -51.93 -0.40 0.05 15 22 H 0.06 0.82 7.78 -51.93 -0.40 0.42 15 23 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 25 H 0.09 1.57 8.08 -51.93 -0.42 1.15 15 26 H 0.02 0.56 8.14 -51.92 -0.42 0.14 15 27 H 0.03 0.74 8.12 -51.93 -0.42 0.32 15 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 15 LS Contribution 232.19 15.07 3.50 3.50 Total: -1.00 -30.37 232.19 -7.17 -37.54 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: -4.36 Total: -4.64 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -0.63 Total: -16.03 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: -0.65 Total: -37.51 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -30.37 -7.17 -37.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260437690.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.601 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds