Wall clock time and date at job start Mon Mar 30 2020 02:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46906 * 109.47182 * 2 1 4 4 C 1.47956 * 110.99793 * 70.64360 * 3 2 1 5 5 C 1.53933 * 86.18208 * 137.58296 * 4 3 2 6 6 C 1.47960 * 110.99920 * 170.00121 * 3 2 1 7 7 H 1.09004 * 113.86146 * 336.74637 * 6 3 2 8 8 C 1.53001 * 113.75769 * 108.09997 * 6 3 2 9 9 C 1.50694 * 109.47168 * 291.06491 * 8 6 3 10 10 H 1.08000 * 120.00563 * 0.02562 * 9 8 6 11 11 C 1.37885 * 119.99902 * 180.02562 * 9 8 6 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46985 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47276 * 299.99832 * 13 11 9 16 16 H 1.48498 * 109.47150 * 60.00043 * 13 11 9 17 17 H 1.09000 * 109.46613 * 299.99979 * 1 2 3 18 18 H 1.08996 * 109.46711 * 59.99875 * 1 2 3 19 19 H 1.08996 * 109.46668 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47440 * 240.00349 * 2 1 3 21 21 H 1.08997 * 109.47595 * 119.99901 * 2 1 3 22 22 H 1.09000 * 113.76026 * 23.26037 * 4 3 2 23 23 H 1.09006 * 113.75582 * 251.89930 * 4 3 2 24 24 H 1.09003 * 113.73432 * 221.91790 * 5 4 3 25 25 H 1.09000 * 113.83019 * 90.64409 * 5 4 3 26 26 H 1.09007 * 109.46922 * 171.06193 * 8 6 3 27 27 H 1.09003 * 109.46836 * 51.06949 * 8 6 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7648 2.0375 1.3032 5 6 3.1839 2.6196 1.1730 6 6 3.4790 1.4315 0.2398 7 1 3.8692 0.5542 0.7559 8 6 4.2955 1.8079 -0.9982 9 6 4.2278 0.6880 -2.0042 10 1 3.6589 -0.2031 -1.7830 11 6 4.8921 0.8008 -3.2071 12 7 5.5844 1.8860 -3.4768 13 14 4.8087 -0.5878 -4.4538 14 1 5.6011 -0.2224 -5.6555 15 1 5.3636 -1.8270 -3.8525 16 1 3.3947 -0.8176 -4.8450 17 1 -0.3632 0.5138 0.8900 18 1 -0.3632 0.5138 -0.8900 19 1 -0.3632 -1.0277 -0.0005 20 1 1.8934 -0.5138 -0.8900 21 1 1.8934 -0.5138 0.8899 22 1 1.6517 1.3368 2.1305 23 1 0.9768 2.7900 1.2709 24 1 3.7533 2.5997 2.1023 25 1 3.2185 3.5882 0.6742 26 1 5.3335 1.9765 -0.7113 27 1 3.8881 2.7177 -1.4392 28 1 6.0520 1.9651 -4.3229 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260437690.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:36 Heat of formation + Delta-G solvation = -2.109954 kcal Electronic energy + Delta-G solvation = -9918.431590 eV Core-core repulsion = 8162.065938 eV Total energy + Delta-G solvation = -1756.365652 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.74306 -35.14030 -33.58144 -31.05087 -27.97686 -26.48668 -23.60284 -22.55118 -20.28280 -18.42829 -17.01343 -16.70321 -15.97599 -15.28308 -14.72100 -14.36287 -13.73853 -13.31145 -13.07792 -12.90047 -12.73639 -12.48473 -12.30537 -12.22233 -11.79121 -11.39220 -11.06209 -10.86356 -10.52260 -9.45275 -8.15258 -6.23352 1.37948 1.41394 1.48747 2.42266 3.12822 3.22243 3.79397 4.01194 4.20420 4.31027 4.52782 4.55755 4.66517 4.81297 4.92699 4.97589 5.02949 5.12451 5.24447 5.39475 5.43970 5.56256 5.84137 5.87376 6.30356 6.45567 6.90224 7.43061 8.96619 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.052168 B = 0.014833 C = 0.012077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.594390 B = 1887.177826 C = 2317.930256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.017 3.983 3 N -0.492 5.492 4 C 0.009 3.991 5 C -0.141 4.141 6 C 0.041 3.959 7 H 0.064 0.936 8 C 0.044 3.956 9 C -0.520 4.520 10 H 0.055 0.945 11 C -0.004 4.004 12 N -0.936 5.936 13 Si 0.959 3.041 14 H -0.283 1.283 15 H -0.267 1.267 16 H -0.272 1.272 17 H 0.064 0.936 18 H 0.048 0.952 19 H 0.071 0.929 20 H 0.051 0.949 21 H 0.040 0.960 22 H 0.081 0.919 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.075 0.925 26 H -0.004 1.004 27 H -0.008 1.008 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.606 -2.824 8.563 11.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 N -0.216 5.216 4 C -0.119 4.119 5 C -0.179 4.179 6 C -0.068 4.068 7 H 0.082 0.918 8 C 0.007 3.993 9 C -0.558 4.558 10 H 0.074 0.926 11 C -0.200 4.200 12 N -0.577 5.577 13 Si 0.784 3.216 14 H -0.208 1.208 15 H -0.192 1.192 16 H -0.197 1.197 17 H 0.083 0.917 18 H 0.067 0.933 19 H 0.090 0.910 20 H 0.070 0.930 21 H 0.058 0.942 22 H 0.099 0.901 23 H 0.111 0.889 24 H 0.104 0.896 25 H 0.094 0.906 26 H 0.014 0.986 27 H 0.011 0.989 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.794 -2.499 7.828 11.326 hybrid contribution 0.626 -0.932 -0.326 1.169 sum -7.168 -3.431 7.503 10.929 Atomic orbital electron populations 1.21651 0.93284 1.02196 1.02077 1.22582 0.97405 0.91070 1.00135 1.68523 1.07158 1.15436 1.30464 1.23861 0.97550 0.98881 0.91633 1.23396 0.96972 0.98171 0.99315 1.23417 0.89847 0.97413 0.96128 0.91783 1.18817 0.92920 0.95424 0.92130 1.21488 1.29434 1.03186 1.01663 0.92643 1.25924 0.95264 0.98360 1.00500 1.70089 1.33941 1.29072 1.24646 0.85590 0.78261 0.79500 0.78225 1.20818 1.19152 1.19674 0.91662 0.93320 0.90977 0.93010 0.94182 0.90089 0.88883 0.89644 0.90622 0.98619 0.98943 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.98 71.98 0.72 -2.98 15 2 C 0.02 0.58 5.47 86.30 0.47 1.06 15 3 N -0.49 -19.33 6.00 -883.78 -5.30 -24.63 15 4 C 0.01 0.27 7.10 86.41 0.61 0.89 15 5 C -0.14 -4.75 7.85 31.24 0.25 -4.50 15 6 C 0.04 1.75 3.19 45.02 0.14 1.89 15 7 H 0.06 2.66 7.80 -2.38 -0.02 2.64 15 8 C 0.04 2.44 5.02 29.85 0.15 2.59 15 9 C -0.52 -30.42 9.05 25.60 0.23 -30.19 15 10 H 0.06 3.14 6.20 -2.91 -0.02 3.12 15 11 C 0.00 -0.22 5.46 84.66 0.46 0.24 15 12 N -0.94 -58.74 13.29 21.45 0.28 -58.45 15 13 Si 0.96 45.83 29.54 68.60 2.03 47.85 15 14 H -0.28 -13.18 7.11 99.48 0.71 -12.47 15 15 H -0.27 -12.13 7.11 99.48 0.71 -11.43 15 16 H -0.27 -12.62 7.11 99.48 0.71 -11.91 15 17 H 0.06 1.55 7.54 -2.39 -0.02 1.53 15 18 H 0.05 1.45 8.14 -2.39 -0.02 1.43 15 19 H 0.07 1.66 8.14 -2.39 -0.02 1.64 15 20 H 0.05 2.11 6.68 -2.38 -0.02 2.09 15 21 H 0.04 1.27 7.69 -2.39 -0.02 1.25 15 22 H 0.08 2.04 7.78 -2.39 -0.02 2.02 15 23 H 0.09 2.49 8.14 -2.38 -0.02 2.47 15 24 H 0.09 2.40 8.14 -2.39 -0.02 2.39 15 25 H 0.08 2.70 8.08 -2.39 -0.02 2.69 15 26 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 15 27 H -0.01 -0.47 8.12 -2.39 -0.02 -0.49 15 28 H 0.26 15.45 8.31 -92.71 -0.77 14.68 15 Total: -1.00 -66.01 232.19 1.15 -64.86 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: 1.11 Total: 1.38 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 3.04 Total: -31.01 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -5.02 Total: -83.08 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -66.01 1.15 -64.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260437690.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.746 kcal (2) G-P(sol) polarization free energy of solvation -66.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds