Wall clock time and date at job start Mon Mar 30 2020 02:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47097 * 2 1 4 4 H 1.09007 * 109.47444 * 305.57603 * 3 2 1 5 5 C 1.50703 * 109.47414 * 65.57562 * 3 2 1 6 6 H 1.08001 * 119.99513 * 61.07361 * 5 3 2 7 7 C 1.37874 * 119.99939 * 241.07660 * 5 3 2 8 8 N 1.31514 * 120.00243 * 352.85454 * 7 5 3 9 9 Si 1.86807 * 119.99714 * 172.85381 * 7 5 3 10 10 H 1.48498 * 109.46727 * 89.99962 * 9 7 5 11 11 H 1.48497 * 109.47063 * 209.99837 * 9 7 5 12 12 H 1.48496 * 109.47260 * 330.00175 * 9 7 5 13 13 C 1.52998 * 109.47199 * 185.57818 * 3 2 1 14 14 C 1.53936 * 113.73837 * 158.76750 * 13 3 2 15 15 N 1.48183 * 86.10505 * 221.95558 * 14 13 3 16 16 C 1.47964 * 90.79497 * 24.59713 * 15 14 13 17 17 H 1.09004 * 109.47263 * 301.06590 * 1 2 3 18 18 H 1.09003 * 109.47024 * 61.06623 * 1 2 3 19 19 H 1.09007 * 109.47372 * 181.06426 * 1 2 3 20 20 H 1.08997 * 109.46780 * 240.00051 * 2 1 3 21 21 H 1.08995 * 109.47180 * 120.00185 * 2 1 3 22 22 H 0.97002 * 119.99844 * 179.97438 * 8 7 5 23 23 H 1.09009 * 112.93548 * 290.33180 * 13 3 2 24 24 H 1.09002 * 113.75343 * 336.23630 * 14 13 3 25 25 H 1.08998 * 113.76053 * 107.59817 * 14 13 3 26 26 H 1.00896 * 111.07570 * 137.51679 * 15 14 13 27 27 H 1.09005 * 113.75767 * 221.08310 * 16 15 14 28 28 H 1.09001 * 113.86110 * 89.73590 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5974 1.9844 -0.8359 5 6 1.6535 2.1119 1.2937 6 1 2.0169 1.7220 2.2330 7 6 0.8361 3.2222 1.2780 8 7 0.5080 3.7811 0.1336 9 14 0.1948 3.9325 2.8823 10 1 1.1498 4.9500 3.3898 11 1 -1.1273 4.5672 2.6491 12 1 0.0521 2.8448 3.8832 13 6 3.5635 1.4447 -0.1402 14 6 4.1357 2.7750 -0.6623 15 7 5.0296 1.9441 -1.5028 16 6 4.0656 0.8226 -1.4556 17 1 -0.3634 0.5303 0.8803 18 1 -0.3633 0.4972 -0.8994 19 1 -0.3634 -1.0275 0.0191 20 1 1.8932 -0.5138 -0.8900 21 1 1.8933 -0.5138 0.8899 22 1 -0.0674 4.5620 0.1227 23 1 4.0723 1.0663 0.7465 24 1 3.4204 3.3665 -1.2337 25 1 4.6595 3.3559 0.0968 26 1 5.1021 2.3195 -2.4365 27 1 4.5336 -0.1537 -1.3291 28 1 3.3291 0.8401 -2.2589 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260454974.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:00 Heat of formation + Delta-G solvation = 9.781356 kcal Electronic energy + Delta-G solvation = -10085.469425 eV Core-core repulsion = 8329.619419 eV Total energy + Delta-G solvation = -1755.850006 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.60692 -34.29623 -31.60224 -28.20547 -25.44023 -24.89675 -22.86019 -19.86109 -18.40395 -16.50615 -15.43675 -14.55132 -14.27834 -13.31921 -12.93201 -12.32933 -11.96653 -11.70670 -11.49295 -10.93795 -10.89457 -10.39475 -10.23408 -10.10699 -9.87000 -9.38393 -8.86969 -8.75822 -8.48374 -8.11297 -5.99918 -3.98832 3.30654 3.38206 3.42000 4.45289 4.93034 5.28099 5.67283 5.78153 6.14615 6.27625 6.30866 6.33004 6.50563 6.55041 6.73176 6.80955 6.89425 6.99988 7.17946 7.29543 7.40746 7.64345 7.86339 7.93146 7.97867 8.50040 9.10826 9.62398 11.09234 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.046021 B = 0.017887 C = 0.014506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.270326 B = 1564.969421 C = 1929.716931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.108 4.108 3 C 0.033 3.967 4 H 0.067 0.933 5 C -0.501 4.501 6 H 0.050 0.950 7 C 0.068 3.932 8 N -0.894 5.894 9 Si 0.882 3.118 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C -0.090 4.090 14 C 0.023 3.977 15 N -0.650 5.650 16 C -0.002 4.002 17 H 0.062 0.938 18 H 0.041 0.959 19 H 0.022 0.978 20 H 0.027 0.973 21 H 0.039 0.961 22 H 0.259 0.741 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.302 0.698 27 H 0.069 0.931 28 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.249 -3.286 -1.879 4.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.146 4.146 3 C 0.014 3.986 4 H 0.086 0.914 5 C -0.539 4.539 6 H 0.069 0.931 7 C -0.133 4.133 8 N -0.533 5.533 9 Si 0.710 3.290 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.110 4.110 14 C -0.106 4.106 15 N -0.274 5.274 16 C -0.132 4.132 17 H 0.081 0.919 18 H 0.060 0.940 19 H 0.042 0.958 20 H 0.045 0.955 21 H 0.058 0.942 22 H 0.069 0.931 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.088 0.912 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.817 -3.350 -1.463 4.615 hybrid contribution -1.171 0.782 0.290 1.437 sum 1.646 -2.568 -1.174 3.269 Atomic orbital electron populations 1.21558 0.97037 0.97989 1.02248 1.21564 0.95330 0.99656 0.98021 1.19069 0.88589 0.91652 0.99262 0.91436 1.21013 1.29071 1.11413 0.92433 0.93122 1.24914 0.96234 0.96477 0.95721 1.69897 1.37011 1.21765 1.24622 0.86752 0.78392 0.79292 0.84525 1.20789 1.21296 1.19908 1.23072 0.99769 0.93544 0.94566 1.23603 0.93698 0.96741 0.96599 1.66941 1.38779 1.07262 1.14379 1.23796 0.93911 0.95728 0.99747 0.91933 0.93977 0.95844 0.95466 0.94219 0.93093 0.90761 0.91245 0.90968 0.88673 0.91229 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.75 37.16 0.36 -2.39 15 2 C -0.11 -2.31 5.30 -26.74 -0.14 -2.45 15 3 C 0.03 0.80 1.83 -91.77 -0.17 0.63 15 4 H 0.07 1.80 6.77 -51.92 -0.35 1.45 15 5 C -0.50 -13.30 7.28 -34.44 -0.25 -13.55 15 6 H 0.05 1.36 7.82 -52.49 -0.41 0.95 15 7 C 0.07 1.83 5.45 -17.82 -0.10 1.74 15 8 N -0.89 -25.09 12.63 55.43 0.70 -24.39 15 9 Si 0.88 21.08 29.54 -169.99 -5.02 16.06 15 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 15 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 13 C -0.09 -1.95 3.26 -89.69 -0.29 -2.24 15 14 C 0.02 0.49 8.46 -2.64 -0.02 0.46 15 15 N -0.65 -12.10 8.53 -116.82 -1.00 -13.09 15 16 C 0.00 -0.03 7.50 -2.76 -0.02 -0.05 15 17 H 0.06 1.43 7.37 -51.93 -0.38 1.05 15 18 H 0.04 0.89 8.14 -51.93 -0.42 0.47 15 19 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 15 20 H 0.03 0.53 7.34 -51.93 -0.38 0.15 15 21 H 0.04 0.84 8.14 -51.93 -0.42 0.41 15 22 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 23 H 0.07 1.65 8.14 -51.92 -0.42 1.22 15 24 H 0.07 1.55 7.99 -51.93 -0.41 1.14 15 25 H 0.07 1.52 8.14 -51.93 -0.42 1.10 15 26 H 0.30 4.98 8.92 -39.29 -0.35 4.63 15 27 H 0.07 1.21 8.14 -51.93 -0.42 0.78 15 28 H 0.06 1.06 8.10 -51.93 -0.42 0.64 15 LS Contribution 232.31 15.07 3.50 3.50 Total: -1.00 -27.15 232.31 -6.83 -33.98 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.38 Total: 1.80 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -0.63 Total: -17.86 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.30 Total: -37.49 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -27.15 -6.83 -33.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260454974.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.765 kcal (2) G-P(sol) polarization free energy of solvation -27.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds