Wall clock time and date at job start Mon Mar 30 2020 02:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47097 * 2 1 4 4 H 1.09007 * 109.47444 * 305.57603 * 3 2 1 5 5 C 1.50703 * 109.47414 * 65.57562 * 3 2 1 6 6 H 1.08001 * 119.99513 * 61.07361 * 5 3 2 7 7 C 1.37874 * 119.99939 * 241.07660 * 5 3 2 8 8 N 1.31514 * 120.00243 * 352.85454 * 7 5 3 9 9 Si 1.86807 * 119.99714 * 172.85381 * 7 5 3 10 10 H 1.48498 * 109.46727 * 89.99962 * 9 7 5 11 11 H 1.48497 * 109.47063 * 209.99837 * 9 7 5 12 12 H 1.48496 * 109.47260 * 330.00175 * 9 7 5 13 13 C 1.52998 * 109.47199 * 185.57818 * 3 2 1 14 14 C 1.53936 * 113.73837 * 158.76750 * 13 3 2 15 15 N 1.48183 * 86.10505 * 221.95558 * 14 13 3 16 16 C 1.47964 * 90.79497 * 24.59713 * 15 14 13 17 17 H 1.09004 * 109.47263 * 301.06590 * 1 2 3 18 18 H 1.09003 * 109.47024 * 61.06623 * 1 2 3 19 19 H 1.09007 * 109.47372 * 181.06426 * 1 2 3 20 20 H 1.08997 * 109.46780 * 240.00051 * 2 1 3 21 21 H 1.08995 * 109.47180 * 120.00185 * 2 1 3 22 22 H 0.97002 * 119.99844 * 179.97438 * 8 7 5 23 23 H 1.09009 * 112.93548 * 290.33180 * 13 3 2 24 24 H 1.09002 * 113.75343 * 336.23630 * 14 13 3 25 25 H 1.08998 * 113.76053 * 107.59817 * 14 13 3 26 26 H 1.00896 * 111.07570 * 137.51679 * 15 14 13 27 27 H 1.09005 * 113.75767 * 221.08310 * 16 15 14 28 28 H 1.09001 * 113.86110 * 89.73590 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5974 1.9844 -0.8359 5 6 1.6535 2.1119 1.2937 6 1 2.0169 1.7220 2.2330 7 6 0.8361 3.2222 1.2780 8 7 0.5080 3.7811 0.1336 9 14 0.1948 3.9325 2.8823 10 1 1.1498 4.9500 3.3898 11 1 -1.1273 4.5672 2.6491 12 1 0.0521 2.8448 3.8832 13 6 3.5635 1.4447 -0.1402 14 6 4.1357 2.7750 -0.6623 15 7 5.0296 1.9441 -1.5028 16 6 4.0656 0.8226 -1.4556 17 1 -0.3634 0.5303 0.8803 18 1 -0.3633 0.4972 -0.8994 19 1 -0.3634 -1.0275 0.0191 20 1 1.8932 -0.5138 -0.8900 21 1 1.8933 -0.5138 0.8899 22 1 -0.0674 4.5620 0.1227 23 1 4.0723 1.0663 0.7465 24 1 3.4204 3.3665 -1.2337 25 1 4.6595 3.3559 0.0968 26 1 5.1021 2.3195 -2.4365 27 1 4.5336 -0.1537 -1.3291 28 1 3.3291 0.8401 -2.2589 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260454974.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:00 Heat of formation + Delta-G solvation = -8.258894 kcal Electronic energy + Delta-G solvation = -10086.251709 eV Core-core repulsion = 8329.619419 eV Total energy + Delta-G solvation = -1756.632290 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.24858 -36.13423 -33.57266 -29.95399 -27.24781 -26.61287 -24.63411 -21.64181 -20.10761 -18.52460 -17.09957 -16.39807 -16.04491 -15.09850 -14.62186 -14.07067 -13.70646 -13.39293 -13.34489 -12.83076 -12.72067 -12.22700 -12.02558 -11.86840 -11.57695 -11.14815 -10.82654 -10.58321 -10.44667 -9.73795 -8.06434 -6.09662 1.39871 1.43046 1.51336 2.46326 3.22995 3.36872 4.00979 4.14902 4.55533 4.58924 4.63735 4.71862 4.83585 4.99580 5.04890 5.17183 5.20517 5.25663 5.44305 5.53851 5.65000 5.74800 5.88854 6.01613 6.44157 6.51398 7.05877 7.53320 9.01862 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.046021 B = 0.017887 C = 0.014506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.270326 B = 1564.969421 C = 1929.716931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.034 3.966 4 H 0.037 0.963 5 C -0.509 4.509 6 H 0.042 0.958 7 C 0.024 3.976 8 N -0.922 5.922 9 Si 0.935 3.065 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.270 1.270 13 C -0.098 4.098 14 C 0.024 3.976 15 N -0.642 5.642 16 C 0.012 3.988 17 H 0.036 0.964 18 H 0.031 0.969 19 H 0.056 0.944 20 H 0.051 0.949 21 H 0.042 0.958 22 H 0.258 0.742 23 H 0.068 0.932 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.318 0.682 27 H 0.091 0.909 28 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.715 -4.283 -1.937 5.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 C 0.014 3.986 4 H 0.055 0.945 5 C -0.547 4.547 6 H 0.060 0.940 7 C -0.174 4.174 8 N -0.562 5.562 9 Si 0.762 3.238 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.195 1.195 13 C -0.117 4.117 14 C -0.106 4.106 15 N -0.266 5.266 16 C -0.118 4.118 17 H 0.055 0.945 18 H 0.050 0.950 19 H 0.075 0.925 20 H 0.069 0.931 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.087 0.913 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.131 0.869 27 H 0.109 0.891 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.293 -4.356 -1.522 5.668 hybrid contribution -1.291 1.064 0.293 1.698 sum 2.002 -3.293 -1.229 4.044 Atomic orbital electron populations 1.21495 0.96893 0.99539 1.00425 1.21504 0.95473 0.98054 0.99265 1.18987 0.90140 0.92649 0.96783 0.94485 1.21282 1.28758 1.11461 0.93216 0.93963 1.25508 0.96708 0.97049 0.98177 1.70008 1.37793 1.22214 1.26151 0.85917 0.77789 0.78642 0.81500 1.20581 1.21159 1.19471 1.23004 0.98051 0.94640 0.96055 1.23449 0.93768 0.96548 0.96830 1.66886 1.37849 1.06646 1.15259 1.23738 0.93806 0.96468 0.97768 0.94526 0.95019 0.92538 0.93074 0.93905 0.93303 0.91338 0.93151 0.91514 0.86921 0.89084 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.75 71.98 0.70 -4.44 15 2 C -0.11 -4.32 5.30 30.59 0.16 -4.16 15 3 C 0.03 1.59 1.83 -11.54 -0.02 1.57 15 4 H 0.04 1.99 6.77 -2.38 -0.02 1.97 15 5 C -0.51 -27.07 7.28 25.60 0.19 -26.88 15 6 H 0.04 2.27 7.82 -2.91 -0.02 2.25 15 7 C 0.02 1.30 5.45 84.65 0.46 1.76 15 8 N -0.92 -52.40 12.63 21.45 0.27 -52.13 15 9 Si 0.93 43.37 29.54 68.60 2.03 45.39 15 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 11 H -0.29 -13.11 7.11 99.48 0.71 -12.41 15 12 H -0.27 -12.23 7.11 99.48 0.71 -11.53 15 13 C -0.10 -4.14 3.26 -10.15 -0.03 -4.17 15 14 C 0.02 1.00 8.46 86.37 0.73 1.73 15 15 N -0.64 -22.51 8.53 -523.51 -4.47 -26.97 15 16 C 0.01 0.42 7.50 86.41 0.65 1.07 15 17 H 0.04 1.65 7.37 -2.39 -0.02 1.63 15 18 H 0.03 1.32 8.14 -2.39 -0.02 1.30 15 19 H 0.06 1.89 8.14 -2.38 -0.02 1.87 15 20 H 0.05 1.85 7.34 -2.39 -0.02 1.83 15 21 H 0.04 1.72 8.14 -2.39 -0.02 1.70 15 22 H 0.26 14.13 8.31 -92.71 -0.77 13.36 15 23 H 0.07 2.96 8.14 -2.38 -0.02 2.94 15 24 H 0.05 2.27 7.99 -2.39 -0.02 2.25 15 25 H 0.07 2.80 8.14 -2.39 -0.02 2.78 15 26 H 0.32 9.75 8.92 -89.70 -0.80 8.95 15 27 H 0.09 2.81 8.14 -2.38 -0.02 2.79 15 28 H 0.06 2.15 8.10 -2.39 -0.02 2.13 15 Total: -1.00 -56.51 232.31 0.99 -55.52 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.32 Total: 11.71 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 2.84 Total: -33.52 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -4.20 Total: -79.10 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -56.51 0.99 -55.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260454974.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.260 kcal (2) G-P(sol) polarization free energy of solvation -56.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds