Wall clock time and date at job start Mon Mar 30 2020 02:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46898 * 110.99968 * 2 1 4 4 C 1.46890 * 110.99827 * 123.95509 * 2 1 3 5 5 C 1.50706 * 112.84750 * 172.50375 * 4 2 1 6 6 H 1.08004 * 120.00097 * 125.96891 * 5 4 2 7 7 C 1.37877 * 119.99738 * 305.96233 * 5 4 2 8 8 N 1.31513 * 120.00252 * 4.77871 * 7 5 4 9 9 Si 1.86805 * 119.99743 * 184.77146 * 7 5 4 10 10 H 1.48499 * 109.47139 * 60.00722 * 9 7 5 11 11 H 1.48499 * 109.46975 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47195 * 300.00559 * 9 7 5 13 13 C 1.53774 * 113.61740 * 303.70009 * 4 2 1 14 14 C 1.53780 * 87.08507 * 89.20237 * 13 4 2 15 15 C 1.53782 * 87.17083 * 25.39129 * 14 13 4 16 16 H 1.08999 * 109.46842 * 302.53823 * 1 2 3 17 17 H 1.09001 * 109.47060 * 62.53276 * 1 2 3 18 18 H 1.09001 * 109.46855 * 182.53552 * 1 2 3 19 19 H 1.09002 * 109.46990 * 188.88368 * 3 2 1 20 20 H 1.09003 * 109.47097 * 308.87881 * 3 2 1 21 21 H 1.08991 * 109.47131 * 68.88108 * 3 2 1 22 22 H 0.97006 * 119.99784 * 179.97438 * 8 7 5 23 23 H 1.09006 * 113.61481 * 334.64903 * 13 4 2 24 24 H 1.09005 * 113.69099 * 203.76574 * 13 4 2 25 25 H 1.09000 * 113.61804 * 139.98211 * 14 13 4 26 26 H 1.08998 * 113.61041 * 270.80488 * 14 13 4 27 27 H 1.09001 * 113.61301 * 89.16082 * 15 14 13 28 28 H 1.08989 * 113.61612 * 220.06261 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4906 -0.9458 1.0802 6 1 4.1026 -0.6512 1.9199 7 6 4.0773 -1.4866 -0.0443 8 7 3.3447 -1.7583 -1.1022 9 14 5.9128 -1.8332 -0.0652 10 1 6.2466 -2.7983 1.0129 11 1 6.2929 -2.4086 -1.3803 12 1 6.6580 -0.5677 0.1551 13 6 1.4864 -0.2714 2.5017 14 6 0.3080 -1.2438 2.3263 15 6 1.2261 -2.0712 1.4111 16 1 -0.3633 0.5527 0.8664 17 1 -0.3633 0.4740 -0.9118 18 1 -0.3633 -1.0267 0.0455 19 1 3.0736 1.3467 -0.1587 20 1 1.5235 1.9418 -0.8000 21 1 1.7801 1.8433 0.9586 22 1 3.7576 -2.1384 -1.8934 23 1 1.1903 0.7777 2.5030 24 1 2.1433 -0.5268 3.3331 25 1 0.0272 -1.7596 3.2446 26 1 -0.5455 -0.8065 1.8084 27 1 1.8125 -2.8204 1.9430 28 1 0.7202 -2.4730 0.5333 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260586607.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:02 Heat of formation + Delta-G solvation = 43.580545 kcal Electronic energy + Delta-G solvation = -10497.027843 eV Core-core repulsion = 8742.643480 eV Total energy + Delta-G solvation = -1754.384363 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.93946 -32.87319 -32.18704 -27.43196 -25.78389 -24.17381 -23.31664 -20.79714 -17.87142 -16.50919 -14.75182 -14.55270 -13.71657 -13.50904 -12.63624 -12.37582 -11.63683 -11.44948 -11.28245 -10.89928 -10.83195 -10.49966 -10.38462 -10.24057 -9.78973 -9.45746 -9.01784 -8.55723 -8.25270 -6.64388 -5.75176 -3.90664 3.38336 3.43567 3.46083 4.53514 5.24812 5.55755 5.84779 5.93046 5.99959 6.25081 6.31325 6.41991 6.49455 6.53563 6.66168 6.72633 6.90098 6.96925 7.10978 7.27373 7.40764 7.51995 7.96402 8.26665 8.71396 8.81182 9.17261 9.75064 11.25323 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.057351 B = 0.019618 C = 0.017852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.100262 B = 1426.929313 C = 1568.064013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.482 5.482 3 C 0.049 3.951 4 C 0.240 3.760 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.084 3.916 8 N -0.839 5.839 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.279 1.279 13 C -0.174 4.174 14 C -0.170 4.170 15 C -0.118 4.118 16 H 0.007 0.993 17 H 0.041 0.959 18 H 0.064 0.936 19 H 0.070 0.930 20 H 0.037 0.963 21 H 0.002 0.998 22 H 0.253 0.747 23 H 0.041 0.959 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.592 2.113 2.651 4.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.204 5.204 3 C -0.099 4.099 4 C 0.151 3.849 5 C -0.562 4.562 6 H 0.073 0.927 7 C -0.122 4.122 8 N -0.473 5.473 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.205 1.205 13 C -0.213 4.213 14 C -0.207 4.207 15 C -0.156 4.156 16 H 0.025 0.975 17 H 0.060 0.940 18 H 0.083 0.917 19 H 0.089 0.911 20 H 0.056 0.944 21 H 0.020 0.980 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.087 0.913 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.439 1.804 1.985 4.362 hybrid contribution 0.717 0.202 0.717 1.034 sum -2.722 2.006 2.702 4.328 Atomic orbital electron populations 1.22684 0.91962 1.00643 0.97677 1.62082 1.02969 1.11403 1.43920 1.22012 1.01623 0.89543 0.96769 1.19583 0.93834 0.89237 0.82226 1.20700 0.90385 1.43611 1.01525 0.92728 1.24960 0.96654 0.95144 0.95483 1.70166 1.34367 1.40156 1.02623 0.86956 0.87065 0.78570 0.77023 1.20426 1.21422 1.20474 1.23624 0.97914 0.96790 1.03013 1.23436 0.97817 0.99916 0.99550 1.23019 0.96940 0.98508 0.97172 0.97458 0.94006 0.91700 0.91114 0.94388 0.97969 0.93647 0.94063 0.91268 0.93886 0.90192 0.91343 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 7.75 60.07 0.47 0.86 15 2 N -0.48 -11.72 4.08 -235.70 -0.96 -12.68 15 3 C 0.05 1.10 9.26 60.06 0.56 1.65 15 4 C 0.24 5.98 0.56 -131.85 -0.07 5.90 15 5 C -0.52 -14.39 7.53 -34.44 -0.26 -14.65 15 6 H 0.05 1.50 7.82 -52.48 -0.41 1.09 15 7 C 0.08 2.34 5.42 -17.82 -0.10 2.24 15 8 N -0.84 -24.12 12.53 55.43 0.69 -23.43 15 9 Si 0.88 21.20 29.54 -169.99 -5.02 16.18 15 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 13 C -0.17 -3.82 6.65 -25.92 -0.17 -3.99 15 14 C -0.17 -3.42 7.27 -25.92 -0.19 -3.61 15 15 C -0.12 -2.76 6.84 -25.82 -0.18 -2.94 15 16 H 0.01 0.14 6.15 -51.93 -0.32 -0.18 15 17 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 18 H 0.06 1.34 5.33 -51.93 -0.28 1.06 15 19 H 0.07 1.71 7.55 -51.93 -0.39 1.32 15 20 H 0.04 0.75 8.09 -51.93 -0.42 0.33 15 21 H 0.00 0.04 6.61 -51.93 -0.34 -0.30 15 22 H 0.25 7.04 8.31 -40.82 -0.34 6.70 15 23 H 0.04 0.87 6.53 -51.93 -0.34 0.54 15 24 H 0.07 1.51 8.10 -51.93 -0.42 1.09 15 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 26 H 0.08 1.52 4.67 -51.93 -0.24 1.27 15 27 H 0.07 1.63 8.10 -51.93 -0.42 1.21 15 28 H 0.05 1.33 6.98 -51.94 -0.36 0.97 15 LS Contribution 219.28 15.07 3.30 3.30 Total: -1.00 -28.64 219.28 -5.86 -34.50 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -3.93 Total: -3.34 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 0.05 Total: -14.54 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.27 Total: -36.11 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -28.64 -5.86 -34.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260586607.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.079 kcal (2) G-P(sol) polarization free energy of solvation -28.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds