Wall clock time and date at job start Mon Mar 30 2020 02:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46898 * 110.99968 * 2 1 4 4 C 1.46890 * 110.99827 * 123.95509 * 2 1 3 5 5 C 1.50706 * 112.84750 * 172.50375 * 4 2 1 6 6 H 1.08004 * 120.00097 * 125.96891 * 5 4 2 7 7 C 1.37877 * 119.99738 * 305.96233 * 5 4 2 8 8 N 1.31513 * 120.00252 * 4.77871 * 7 5 4 9 9 Si 1.86805 * 119.99743 * 184.77146 * 7 5 4 10 10 H 1.48499 * 109.47139 * 60.00722 * 9 7 5 11 11 H 1.48499 * 109.46975 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47195 * 300.00559 * 9 7 5 13 13 C 1.53774 * 113.61740 * 303.70009 * 4 2 1 14 14 C 1.53780 * 87.08507 * 89.20237 * 13 4 2 15 15 C 1.53782 * 87.17083 * 25.39129 * 14 13 4 16 16 H 1.08999 * 109.46842 * 302.53823 * 1 2 3 17 17 H 1.09001 * 109.47060 * 62.53276 * 1 2 3 18 18 H 1.09001 * 109.46855 * 182.53552 * 1 2 3 19 19 H 1.09002 * 109.46990 * 188.88368 * 3 2 1 20 20 H 1.09003 * 109.47097 * 308.87881 * 3 2 1 21 21 H 1.08991 * 109.47131 * 68.88108 * 3 2 1 22 22 H 0.97006 * 119.99784 * 179.97438 * 8 7 5 23 23 H 1.09006 * 113.61481 * 334.64903 * 13 4 2 24 24 H 1.09005 * 113.69099 * 203.76574 * 13 4 2 25 25 H 1.09000 * 113.61804 * 139.98211 * 14 13 4 26 26 H 1.08998 * 113.61041 * 270.80488 * 14 13 4 27 27 H 1.09001 * 113.61301 * 89.16082 * 15 14 13 28 28 H 1.08989 * 113.61612 * 220.06261 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4906 -0.9458 1.0802 6 1 4.1026 -0.6512 1.9199 7 6 4.0773 -1.4866 -0.0443 8 7 3.3447 -1.7583 -1.1022 9 14 5.9128 -1.8332 -0.0652 10 1 6.2466 -2.7983 1.0129 11 1 6.2929 -2.4086 -1.3803 12 1 6.6580 -0.5677 0.1551 13 6 1.4864 -0.2714 2.5017 14 6 0.3080 -1.2438 2.3263 15 6 1.2261 -2.0712 1.4111 16 1 -0.3633 0.5527 0.8664 17 1 -0.3633 0.4740 -0.9118 18 1 -0.3633 -1.0267 0.0455 19 1 3.0736 1.3467 -0.1587 20 1 1.5235 1.9418 -0.8000 21 1 1.7801 1.8433 0.9586 22 1 3.7576 -2.1384 -1.8934 23 1 1.1903 0.7777 2.5030 24 1 2.1433 -0.5268 3.3331 25 1 0.0272 -1.7596 3.2446 26 1 -0.5455 -0.8065 1.8084 27 1 1.8125 -2.8204 1.9430 28 1 0.7202 -2.4730 0.5333 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260586607.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:01 Heat of formation + Delta-G solvation = 25.419518 kcal Electronic energy + Delta-G solvation = -10497.815364 eV Core-core repulsion = 8742.643480 eV Total energy + Delta-G solvation = -1755.171885 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.72249 -34.63385 -34.27087 -29.26599 -27.62433 -25.96787 -25.21160 -22.53526 -19.72364 -18.45615 -16.58404 -16.55106 -15.55886 -15.24713 -14.38907 -14.17939 -13.50184 -13.19467 -13.09725 -12.80734 -12.67712 -12.34103 -12.18840 -11.99919 -11.69313 -11.18110 -10.85293 -10.53669 -10.26424 -8.43281 -7.82637 -6.04980 1.45043 1.46165 1.52465 2.51482 3.28131 3.68265 4.11927 4.19428 4.33862 4.58927 4.65594 4.69661 4.83690 4.84838 4.98420 5.10094 5.14261 5.23940 5.30011 5.49241 5.57703 5.72211 5.83604 6.31894 6.77818 6.95933 7.21098 7.63821 9.14457 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.057351 B = 0.019618 C = 0.017852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.100262 B = 1426.929313 C = 1568.064013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.511 5.511 3 C 0.055 3.945 4 C 0.219 3.781 5 C -0.539 4.539 6 H 0.044 0.956 7 C 0.042 3.958 8 N -0.866 5.866 9 Si 0.932 3.068 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 C -0.169 4.169 14 C -0.146 4.146 15 C -0.122 4.122 16 H 0.025 0.975 17 H 0.055 0.945 18 H 0.061 0.939 19 H 0.041 0.959 20 H 0.059 0.941 21 H 0.013 0.987 22 H 0.251 0.749 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.279 2.540 3.219 5.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.233 5.233 3 C -0.093 4.093 4 C 0.130 3.870 5 C -0.578 4.578 6 H 0.062 0.938 7 C -0.162 4.162 8 N -0.501 5.501 9 Si 0.759 3.241 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.202 1.202 13 C -0.209 4.209 14 C -0.183 4.183 15 C -0.160 4.160 16 H 0.043 0.957 17 H 0.074 0.926 18 H 0.080 0.920 19 H 0.060 0.940 20 H 0.078 0.922 21 H 0.031 0.969 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.115 0.885 27 H 0.073 0.927 28 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.127 2.237 2.567 5.350 hybrid contribution 0.927 0.086 0.548 1.081 sum -3.200 2.324 3.115 5.034 Atomic orbital electron populations 1.22664 0.89743 1.00943 0.99171 1.61908 1.05186 1.12145 1.44104 1.21927 0.99974 0.89305 0.98123 1.19714 0.92731 0.90490 0.84033 1.21026 0.92305 1.43287 1.01134 0.93781 1.25541 1.00206 0.95159 0.95274 1.70283 1.35719 1.41180 1.02947 0.86055 0.82779 0.78335 0.76918 1.20106 1.21266 1.20222 1.23521 0.98514 0.97694 1.01133 1.23302 0.97113 0.98198 0.99715 1.22945 0.97658 0.98014 0.97432 0.95676 0.92610 0.92002 0.94006 0.92242 0.96909 0.93996 0.93227 0.91652 0.91511 0.88522 0.92659 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.89 7.75 127.69 0.99 1.88 15 2 N -0.51 -24.22 4.08 -899.60 -3.67 -27.89 15 3 C 0.06 2.40 9.26 127.69 1.18 3.58 15 4 C 0.22 10.74 0.56 3.37 0.00 10.74 15 5 C -0.54 -29.68 7.53 25.60 0.19 -29.49 15 6 H 0.04 2.44 7.82 -2.91 -0.02 2.42 15 7 C 0.04 2.35 5.42 84.65 0.46 2.81 15 8 N -0.87 -50.10 12.53 21.45 0.27 -49.83 15 9 Si 0.93 43.82 29.54 68.60 2.03 45.85 15 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 15 12 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 13 C -0.17 -7.08 6.65 31.12 0.21 -6.88 15 14 C -0.15 -5.47 7.27 31.12 0.23 -5.24 15 15 C -0.12 -5.60 6.84 31.18 0.21 -5.39 15 16 H 0.03 0.89 6.15 -2.39 -0.01 0.87 15 17 H 0.06 1.98 8.14 -2.39 -0.02 1.96 15 18 H 0.06 2.42 5.33 -2.39 -0.01 2.40 15 19 H 0.04 2.01 7.55 -2.39 -0.02 2.00 15 20 H 0.06 2.26 8.09 -2.39 -0.02 2.24 15 21 H 0.01 0.51 6.61 -2.39 -0.02 0.50 15 22 H 0.25 14.04 8.31 -92.70 -0.77 13.26 15 23 H 0.05 1.97 6.53 -2.38 -0.02 1.96 15 24 H 0.06 2.75 8.10 -2.38 -0.02 2.73 15 25 H 0.07 2.19 8.14 -2.39 -0.02 2.17 15 26 H 0.10 3.31 4.67 -2.39 -0.01 3.30 15 27 H 0.05 2.62 8.10 -2.39 -0.02 2.60 15 28 H 0.04 1.97 6.98 -2.39 -0.02 1.95 15 Total: -1.00 -59.41 219.28 3.22 -56.18 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.13 Total: 3.68 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 3.47 Total: -28.00 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -3.40 Total: -77.72 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -59.41 3.22 -56.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260586607.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.604 kcal (2) G-P(sol) polarization free energy of solvation -59.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds