Wall clock time and date at job start Mon Mar 30 2020 01:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47395 * 2 1 4 4 C 1.53002 * 109.47297 * 239.99683 * 2 1 3 5 5 H 1.09002 * 115.54892 * 85.58681 * 4 2 1 6 6 C 1.52998 * 117.49837 * 231.24886 * 4 2 1 7 7 C 1.52995 * 117.49824 * 299.91282 * 4 2 1 8 8 N 1.46901 * 117.50292 * 0.02562 * 7 4 2 9 9 C 1.50707 * 117.49555 * 145.02018 * 7 4 2 10 10 H 1.08003 * 119.99909 * 94.55117 * 9 7 4 11 11 C 1.37869 * 120.00161 * 274.54812 * 9 7 4 12 12 N 1.31513 * 119.99914 * 5.83144 * 11 9 7 13 13 Si 1.86797 * 120.00117 * 185.82656 * 11 9 7 14 14 H 1.48497 * 109.47255 * 60.00135 * 13 11 9 15 15 H 1.48498 * 109.47161 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47348 * 300.00065 * 13 11 9 17 17 H 1.09004 * 109.46667 * 180.02562 * 1 2 3 18 18 H 1.08999 * 109.47342 * 299.99747 * 1 2 3 19 19 H 1.09004 * 109.46755 * 60.00491 * 1 2 3 20 20 H 1.09004 * 109.47395 * 119.99910 * 2 1 3 21 21 H 1.09004 * 109.46776 * 300.00289 * 3 2 1 22 22 H 1.09005 * 109.47156 * 59.99360 * 3 2 1 23 23 H 1.08993 * 109.47851 * 179.97438 * 3 2 1 24 24 H 1.09002 * 117.50096 * 214.97491 * 6 4 2 25 25 H 1.08995 * 117.50334 * 0.02562 * 6 4 2 26 26 H 1.00900 * 110.99980 * 174.73497 * 8 7 4 27 27 H 1.00903 * 110.99648 * 298.69238 * 8 7 4 28 28 H 0.97002 * 120.00172 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 2.1254 -0.1064 -2.1452 6 6 3.0764 -1.8293 -1.0515 7 6 1.6375 -2.1859 -1.4331 8 7 0.7904 -2.7918 -0.3972 9 6 1.3898 -2.6680 -2.8393 10 1 2.1838 -3.1458 -3.3941 11 6 0.1496 -2.4993 -3.4176 12 7 -0.7821 -1.8172 -2.7881 13 14 -0.2072 -3.2394 -5.0951 14 1 -0.0385 -4.7134 -5.0320 15 1 -1.6014 -2.9168 -5.4920 16 1 0.7346 -2.6757 -6.0954 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3634 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8901 20 1 1.8934 -0.5138 0.8900 21 1 1.6767 1.9563 -0.8900 22 1 1.6766 1.9564 0.8900 23 1 3.1300 1.4425 0.0005 24 1 3.8433 -1.9438 -1.8177 25 1 3.3946 -2.0447 -0.0315 26 1 0.5146 -3.7270 -0.6569 27 1 1.2554 -2.7874 0.4983 28 1 -1.6547 -1.6988 -3.1947 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260588177.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:00 Heat of formation + Delta-G solvation = -8.774519 kcal Electronic energy + Delta-G solvation = -10157.009726 eV Core-core repulsion = 8400.355077 eV Total energy + Delta-G solvation = -1756.654649 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.29674 -34.95866 -33.61802 -31.03309 -27.62375 -27.41300 -23.45196 -21.67683 -19.94799 -18.38274 -16.69856 -16.02930 -15.62863 -14.97431 -14.29630 -13.77122 -13.75921 -13.49974 -12.87800 -12.78602 -12.69014 -12.37502 -12.08625 -11.62828 -11.50490 -11.15218 -11.07230 -10.64501 -10.12704 -8.44821 -7.99317 -6.17254 1.44551 1.45586 1.52401 2.46006 3.21677 3.56217 4.10784 4.19337 4.40579 4.50868 4.71091 4.86648 4.94852 5.02869 5.11669 5.25149 5.29391 5.35400 5.44029 5.69678 5.72422 5.85885 6.09304 6.26678 6.72554 7.01395 7.32679 7.52420 9.03532 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.058542 B = 0.016302 C = 0.015309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.171584 B = 1717.207112 C = 1828.595342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.045 4.045 3 C -0.137 4.137 4 C -0.144 4.144 5 H 0.053 0.947 6 C -0.235 4.235 7 C 0.218 3.782 8 N -0.790 5.790 9 C -0.542 4.542 10 H 0.046 0.954 11 C 0.043 3.957 12 N -0.861 5.861 13 Si 0.945 3.055 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.280 1.280 17 H 0.082 0.918 18 H 0.039 0.961 19 H 0.018 0.982 20 H 0.059 0.941 21 H 0.038 0.962 22 H 0.064 0.936 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.331 0.669 27 H 0.319 0.681 28 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.823 1.448 4.316 5.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.064 4.064 3 C -0.194 4.194 4 C -0.164 4.164 5 H 0.072 0.928 6 C -0.275 4.275 7 C 0.125 3.875 8 N -0.316 5.316 9 C -0.581 4.581 10 H 0.065 0.935 11 C -0.162 4.162 12 N -0.495 5.495 13 Si 0.771 3.229 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.206 1.206 17 H 0.101 0.899 18 H 0.058 0.942 19 H 0.037 0.963 20 H 0.078 0.922 21 H 0.057 0.943 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.144 0.856 27 H 0.132 0.868 28 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.081 2.101 4.172 5.114 hybrid contribution 0.606 -0.894 -1.098 1.540 sum 2.687 1.207 3.074 4.258 Atomic orbital electron populations 1.21710 0.95062 1.03956 0.97852 1.20434 0.95835 0.95056 0.95042 1.21800 1.00562 0.95963 1.01104 1.22308 1.03801 0.92987 0.97325 0.92820 1.23726 0.95237 1.08340 1.00215 1.18823 0.85835 0.92569 0.90261 1.58461 1.44713 1.25285 1.03128 1.20620 0.97391 1.41874 0.98213 0.93531 1.25579 0.96189 0.94568 0.99880 1.70220 1.03832 1.37150 1.38290 0.85858 0.76883 0.79175 0.80980 1.19726 1.21032 1.20561 0.89907 0.94166 0.96289 0.92214 0.94276 0.91714 0.92724 0.91553 0.89419 0.85625 0.86816 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.41 8.99 71.98 0.65 -4.77 15 2 C -0.05 -1.77 2.69 -10.79 -0.03 -1.80 15 3 C -0.14 -4.54 9.18 71.98 0.66 -3.88 15 4 C -0.14 -6.64 4.85 -10.80 -0.05 -6.69 15 5 H 0.05 2.76 8.11 -2.39 -0.02 2.74 15 6 C -0.24 -10.14 9.58 30.62 0.29 -9.84 15 7 C 0.22 10.62 2.27 2.81 0.01 10.63 15 8 N -0.79 -34.91 6.92 -154.41 -1.07 -35.98 15 9 C -0.54 -29.68 8.85 25.60 0.23 -29.45 15 10 H 0.05 2.57 7.82 -2.91 -0.02 2.55 15 11 C 0.04 2.34 5.44 84.65 0.46 2.80 15 12 N -0.86 -48.16 13.16 21.44 0.28 -47.87 15 13 Si 0.94 43.04 29.54 68.60 2.03 45.07 15 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 15 H -0.28 -12.76 7.11 99.48 0.71 -12.06 15 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 17 H 0.08 3.88 5.78 -2.39 -0.01 3.86 15 18 H 0.04 1.44 8.14 -2.39 -0.02 1.42 15 19 H 0.02 0.86 8.14 -2.39 -0.02 0.84 15 20 H 0.06 2.19 7.88 -2.39 -0.02 2.17 15 21 H 0.04 1.35 8.14 -2.39 -0.02 1.33 15 22 H 0.06 1.83 8.14 -2.38 -0.02 1.81 15 23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 15 24 H 0.07 2.89 8.14 -2.39 -0.02 2.87 15 25 H 0.09 3.31 7.97 -2.39 -0.02 3.29 15 26 H 0.33 14.78 8.85 -89.69 -0.79 13.99 15 27 H 0.32 12.18 8.66 -89.69 -0.78 11.41 15 28 H 0.26 13.84 8.31 -92.71 -0.77 13.07 15 Total: -1.00 -57.22 235.02 3.02 -54.20 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: -0.43 Total: 27.59 kcal Atomic # 6 Polarization: -45.21 SS G_CDS: 2.21 Total: -43.00 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -0.79 Total: -83.85 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -57.22 3.02 -54.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260588177.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.423 kcal (2) G-P(sol) polarization free energy of solvation -57.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds