Wall clock time and date at job start Mon Mar 30 2020 01:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47253 * 2 1 4 4 C 1.53005 * 109.46733 * 119.99721 * 2 1 3 5 5 H 1.09002 * 115.56401 * 318.34072 * 4 2 1 6 6 C 1.52999 * 117.50063 * 104.03794 * 4 2 1 7 7 C 1.52998 * 117.49713 * 172.66104 * 4 2 1 8 8 N 1.46905 * 117.52148 * 145.02728 * 7 4 2 9 9 C 1.50705 * 117.50198 * 359.97438 * 7 4 2 10 10 H 1.07997 * 119.99332 * 56.70067 * 9 7 4 11 11 C 1.37871 * 120.00147 * 236.70401 * 9 7 4 12 12 N 1.31515 * 120.00020 * 164.93059 * 11 9 7 13 13 Si 1.86796 * 120.00211 * 344.93179 * 11 9 7 14 14 H 1.48500 * 109.47389 * 265.13536 * 13 11 9 15 15 H 1.48499 * 109.47084 * 25.13224 * 13 11 9 16 16 H 1.48504 * 109.47398 * 145.13270 * 13 11 9 17 17 H 1.08997 * 109.47382 * 300.00473 * 1 2 3 18 18 H 1.09002 * 109.46690 * 60.00475 * 1 2 3 19 19 H 1.09004 * 109.46972 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47382 * 239.99527 * 2 1 3 21 21 H 1.09002 * 109.47254 * 186.47350 * 3 2 1 22 22 H 1.08997 * 109.46647 * 306.47153 * 3 2 1 23 23 H 1.09005 * 109.46841 * 66.46981 * 3 2 1 24 24 H 1.09002 * 117.49597 * 359.97438 * 6 4 2 25 25 H 1.08998 * 117.51862 * 214.97195 * 6 4 2 26 26 H 1.00900 * 110.99850 * 159.66185 * 8 7 4 27 27 H 1.00895 * 110.99705 * 283.62378 * 8 7 4 28 28 H 0.97003 * 120.00312 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5040 -0.4993 2.1722 6 6 2.5857 -2.1396 1.0730 7 6 3.5444 -0.9801 1.3510 8 7 4.1565 -0.9109 2.6846 9 6 4.4106 -0.5057 0.2126 10 1 4.3995 0.5346 -0.0770 11 6 5.2171 -1.3998 -0.4589 12 7 5.7404 -1.0700 -1.6196 13 14 5.5667 -3.0795 0.2797 14 1 6.8453 -3.0326 1.0334 15 1 4.4633 -3.4550 1.1998 16 1 5.6693 -4.0865 -0.8070 17 1 -0.3634 0.5139 0.8899 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3633 -1.0277 0.0005 20 1 1.8934 -0.5139 -0.8899 21 1 3.1239 1.4447 -0.1159 22 1 1.5852 1.9886 -0.8264 23 1 1.7743 1.9218 0.9423 24 1 2.5811 -2.5591 0.0669 25 1 2.4091 -2.8511 1.8796 26 1 5.0369 -1.4034 2.7043 27 1 4.2711 0.0468 2.9806 28 1 6.3081 -1.6989 -2.0919 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260588185.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:02 Heat of formation + Delta-G solvation = -8.261157 kcal Electronic energy + Delta-G solvation = -10174.068028 eV Core-core repulsion = 8417.435640 eV Total energy + Delta-G solvation = -1756.632388 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.48521 -35.07110 -34.05403 -31.17635 -28.24831 -27.19347 -23.67103 -21.65858 -20.23706 -18.43752 -16.76701 -16.21807 -15.82390 -15.25212 -14.83317 -14.45321 -13.70332 -13.30917 -13.03364 -12.91198 -12.79397 -12.63030 -11.93669 -11.80501 -11.44964 -11.31914 -10.86008 -10.60224 -9.96533 -9.31097 -8.29028 -6.32805 1.33902 1.40393 1.55295 2.38680 3.03312 3.26081 3.73580 4.17614 4.30305 4.52678 4.59522 4.71493 4.92101 4.95226 5.05338 5.10061 5.18090 5.25245 5.34991 5.52671 5.54681 5.68551 5.84647 6.22654 6.61600 6.82421 6.85851 7.37491 8.84073 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.049520 B = 0.019554 C = 0.017476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.294774 B = 1431.591086 C = 1601.818766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.053 4.053 3 C -0.140 4.140 4 C -0.120 4.120 5 H 0.101 0.899 6 C -0.172 4.172 7 C 0.136 3.864 8 N -0.819 5.819 9 C -0.507 4.507 10 H 0.054 0.946 11 C 0.029 3.971 12 N -0.939 5.939 13 Si 0.915 3.085 14 H -0.279 1.279 15 H -0.219 1.219 16 H -0.299 1.299 17 H 0.063 0.937 18 H 0.058 0.942 19 H 0.053 0.947 20 H 0.039 0.961 21 H 0.045 0.955 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.328 0.672 27 H 0.338 0.662 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.321 -0.215 5.420 9.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.072 4.072 3 C -0.197 4.197 4 C -0.139 4.139 5 H 0.119 0.881 6 C -0.210 4.210 7 C 0.044 3.956 8 N -0.346 5.346 9 C -0.547 4.547 10 H 0.071 0.929 11 C -0.170 4.170 12 N -0.578 5.578 13 Si 0.740 3.260 14 H -0.205 1.205 15 H -0.142 1.142 16 H -0.226 1.226 17 H 0.082 0.918 18 H 0.077 0.923 19 H 0.072 0.928 20 H 0.057 0.943 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.105 0.895 26 H 0.140 0.860 27 H 0.150 0.850 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.886 -0.660 5.556 9.669 hybrid contribution 1.574 -0.246 -0.741 1.757 sum -6.312 -0.906 4.815 7.991 Atomic orbital electron populations 1.21759 0.93761 1.01652 1.01935 1.20449 0.95508 0.95621 0.95622 1.21844 1.01447 0.95729 1.00704 1.22373 0.95970 0.97075 0.98459 0.88070 1.23027 1.06317 0.91574 1.00088 1.19244 0.89096 0.99948 0.87273 1.58988 1.30000 1.19400 1.26224 1.21103 1.23423 0.95830 1.14315 0.92857 1.25743 0.95397 1.01907 0.93972 1.70113 1.34771 1.38475 1.14456 0.86257 0.80103 0.80201 0.79416 1.20457 1.14157 1.22603 0.91834 0.92329 0.92756 0.94280 0.93598 0.93043 0.92604 0.91550 0.89494 0.85991 0.84970 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 9.19 71.98 0.66 -3.24 15 2 C -0.05 -2.02 2.42 -10.79 -0.03 -2.05 15 3 C -0.14 -5.25 8.98 71.98 0.65 -4.61 15 4 C -0.12 -4.72 4.98 -10.79 -0.05 -4.78 15 5 H 0.10 3.65 8.14 -2.39 -0.02 3.63 15 6 C -0.17 -7.28 6.88 30.59 0.21 -7.07 15 7 C 0.14 6.11 1.70 2.78 0.00 6.12 15 8 N -0.82 -32.69 9.69 -154.51 -1.50 -34.18 15 9 C -0.51 -27.32 8.07 25.60 0.21 -27.12 15 10 H 0.05 3.18 5.45 -2.91 -0.02 3.16 15 11 C 0.03 1.64 5.43 84.65 0.46 2.10 15 12 N -0.94 -57.32 13.96 21.45 0.30 -57.03 15 13 Si 0.92 43.09 25.84 68.60 1.77 44.86 15 14 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 15 H -0.22 -9.56 5.27 99.48 0.52 -9.04 15 16 H -0.30 -14.38 7.11 99.48 0.71 -13.68 15 17 H 0.06 1.64 8.14 -2.39 -0.02 1.62 15 18 H 0.06 1.55 8.14 -2.39 -0.02 1.53 15 19 H 0.05 1.51 8.14 -2.38 -0.02 1.49 15 20 H 0.04 1.75 7.76 -2.39 -0.02 1.73 15 21 H 0.05 2.06 4.90 -2.39 -0.01 2.05 15 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 15 23 H 0.05 1.85 8.14 -2.38 -0.02 1.83 15 24 H 0.07 2.99 7.62 -2.39 -0.02 2.97 15 25 H 0.09 3.42 8.12 -2.39 -0.02 3.41 15 26 H 0.33 13.14 7.82 -89.69 -0.70 12.44 15 27 H 0.34 12.47 9.08 -89.70 -0.81 11.65 15 28 H 0.26 15.23 8.31 -92.71 -0.77 14.46 15 Total: -1.00 -60.27 224.53 2.14 -58.14 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -0.55 Total: 28.86 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 2.11 Total: -40.64 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -1.20 Total: -91.21 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.77 Total: 44.86 kcal Total: -60.27 2.14 -58.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260588185.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.875 kcal (2) G-P(sol) polarization free energy of solvation -60.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds