Wall clock time and date at job start Mon Mar 30 2020 02:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 C 1.53001 * 109.47042 * 119.99940 * 2 1 3 5 5 C 1.50694 * 109.47168 * 295.00098 * 4 2 1 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99902 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99854 * 179.72538 * 7 5 4 10 10 H 1.48504 * 109.47032 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46816 * 120.00323 * 9 7 5 12 12 H 1.48495 * 109.46630 * 240.00111 * 9 7 5 13 13 C 1.53001 * 109.47100 * 240.00151 * 2 1 3 14 14 C 1.53938 * 113.73085 * 156.72840 * 13 2 1 15 15 N 1.47959 * 86.17811 * 221.92081 * 14 13 2 16 16 C 1.47959 * 90.76386 * 24.68949 * 15 14 13 17 17 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 18 18 H 1.08995 * 109.47017 * 300.00198 * 1 2 3 19 19 H 1.09005 * 109.47003 * 60.00012 * 1 2 3 20 20 H 1.08998 * 109.46837 * 175.00120 * 4 2 1 21 21 H 1.09002 * 109.46926 * 54.99923 * 4 2 1 22 22 H 0.97001 * 119.99646 * 180.02562 * 8 7 5 23 23 H 1.08997 * 112.93471 * 288.43412 * 13 2 1 24 24 H 1.08997 * 113.76162 * 336.23672 * 14 13 2 25 25 H 1.09000 * 113.75930 * 107.59966 * 14 13 2 26 26 H 1.00901 * 110.99736 * 271.79764 * 15 14 13 27 27 H 1.08999 * 113.75759 * 220.98795 * 16 15 14 28 28 H 1.09006 * 113.75712 * 89.63097 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0570 2.4765 6 1 1.0806 0.9746 2.3757 7 6 1.9923 -0.4023 3.7284 8 7 2.6755 -1.5194 3.8512 9 14 1.5047 0.5664 5.2493 10 1 0.7524 1.7806 4.8428 11 1 0.6480 -0.2778 6.1202 12 1 2.7257 0.9662 5.9939 13 6 2.0400 -0.7212 -1.2493 14 6 3.4670 -0.3153 -1.6598 15 7 2.9605 -0.3145 -3.0500 16 6 1.5823 -0.0738 -2.5687 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5138 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 3.1263 -0.7994 1.2056 21 1 1.6053 -1.7198 1.2952 22 1 2.9221 -1.8427 4.7319 23 1 1.8823 -1.7991 -1.2116 24 1 3.7641 0.6698 -1.3001 25 1 4.2153 -1.0837 -1.4653 26 1 3.0436 -1.2302 -3.4656 27 1 0.8246 -0.6492 -3.1006 28 1 1.3280 0.9820 -2.4748 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260597363.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:40 Heat of formation + Delta-G solvation = -9.697904 kcal Electronic energy + Delta-G solvation = -9812.119126 eV Core-core repulsion = 8055.424435 eV Total energy + Delta-G solvation = -1756.694690 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.61550 -36.23414 -33.98741 -29.16342 -27.67476 -26.58711 -25.08787 -21.73037 -20.60682 -18.45463 -17.37080 -16.55099 -15.50986 -15.19378 -14.81833 -14.14913 -13.62288 -13.40697 -13.30267 -13.16039 -12.76900 -12.73453 -12.24388 -12.01175 -11.68450 -11.36963 -10.97690 -10.86252 -10.53699 -9.36772 -8.17927 -6.27512 1.39147 1.39722 1.52627 2.41517 3.14927 3.17672 3.65204 3.89964 4.35332 4.50166 4.59297 4.68428 4.80332 4.86057 4.87107 4.98737 5.07732 5.24217 5.34725 5.42397 5.48538 5.56886 5.82747 5.89244 6.29789 6.45981 6.89530 7.41114 8.93851 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.083587 B = 0.011250 C = 0.010553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.898839 B = 2488.193255 C = 2652.697631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 H 0.053 0.947 4 C 0.035 3.965 5 C -0.531 4.531 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.280 1.280 13 C -0.150 4.150 14 C 0.021 3.979 15 N -0.665 5.665 16 C 0.031 3.969 17 H 0.040 0.960 18 H 0.042 0.958 19 H 0.067 0.933 20 H -0.013 1.013 21 H -0.014 1.014 22 H 0.262 0.738 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.342 0.658 27 H 0.087 0.913 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.643 2.266 -9.238 9.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 H 0.072 0.928 4 C -0.002 4.002 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.169 4.169 14 C -0.109 4.109 15 N -0.292 5.292 16 C -0.098 4.098 17 H 0.059 0.941 18 H 0.061 0.939 19 H 0.086 0.914 20 H 0.006 0.994 21 H 0.004 0.996 22 H 0.070 0.930 23 H 0.097 0.903 24 H 0.106 0.894 25 H 0.087 0.913 26 H 0.157 0.843 27 H 0.106 0.894 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.290 2.883 -9.518 10.205 hybrid contribution -0.269 -0.838 1.691 1.907 sum -2.559 2.045 -7.827 8.485 Atomic orbital electron populations 1.21616 0.94963 1.00768 1.00960 1.21047 0.96185 0.98181 0.93659 0.92848 1.18994 0.94220 0.94317 0.92717 1.21734 1.34319 1.08542 0.92272 0.92170 1.25963 0.95270 0.96102 1.02687 1.70109 1.40396 1.23033 1.24191 0.85461 0.78061 0.78923 0.79000 1.18546 1.20532 1.20559 1.24223 0.96659 1.00047 0.95982 1.23623 0.96199 1.01711 0.89401 1.65069 1.10635 1.35173 1.18368 1.23662 0.91856 1.01776 0.92523 0.94081 0.93932 0.91411 0.99438 0.99604 0.92969 0.90284 0.89437 0.91292 0.84287 0.89410 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 8.81 71.98 0.63 -3.92 15 2 C -0.07 -2.87 2.10 -10.79 -0.02 -2.90 15 3 H 0.05 2.19 7.94 -2.39 -0.02 2.17 15 4 C 0.03 1.82 4.45 29.85 0.13 1.95 15 5 C -0.53 -30.14 8.41 25.60 0.22 -29.92 15 6 H 0.06 3.29 7.06 -2.91 -0.02 3.27 15 7 C 0.00 -0.18 5.46 84.66 0.46 0.28 15 8 N -0.94 -57.58 13.29 21.45 0.28 -57.30 15 9 Si 0.96 44.65 29.54 68.60 2.03 46.68 15 10 H -0.26 -11.57 7.11 99.48 0.71 -10.86 15 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 15 12 H -0.28 -12.72 7.11 99.48 0.71 -12.02 15 13 C -0.15 -4.92 3.29 -10.15 -0.03 -4.95 15 14 C 0.02 0.65 8.46 86.41 0.73 1.38 15 15 N -0.67 -18.01 8.55 -524.18 -4.48 -22.50 15 16 C 0.03 0.83 7.52 86.40 0.65 1.48 15 17 H 0.04 1.48 8.14 -2.39 -0.02 1.46 15 18 H 0.04 1.68 6.95 -2.39 -0.02 1.66 15 19 H 0.07 1.96 7.43 -2.38 -0.02 1.94 15 20 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 15 21 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 15 22 H 0.26 15.10 8.31 -92.71 -0.77 14.33 15 23 H 0.08 2.66 8.14 -2.39 -0.02 2.64 15 24 H 0.09 2.90 7.96 -2.39 -0.02 2.88 15 25 H 0.07 2.12 8.14 -2.39 -0.02 2.10 15 26 H 0.34 7.90 8.89 -89.69 -0.80 7.10 15 27 H 0.09 1.92 8.14 -2.39 -0.02 1.90 15 28 H 0.10 2.51 8.06 -2.38 -0.02 2.49 15 Total: -1.00 -63.17 232.63 0.92 -62.25 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 0.32 Total: 7.48 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 2.77 Total: -36.61 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -4.20 Total: -79.80 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -63.17 0.92 -62.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597363.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.553 kcal (2) G-P(sol) polarization free energy of solvation -63.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds