Wall clock time and date at job start Mon Mar 30 2020 01:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47140 * 2 1 4 4 H 1.09005 * 115.55276 * 330.67244 * 3 2 1 5 5 C 1.52997 * 117.52101 * 116.36953 * 3 2 1 6 6 C 1.52995 * 117.50155 * 185.00209 * 3 2 1 7 7 N 1.46902 * 117.50115 * 359.97438 * 6 3 2 8 8 C 1.53002 * 117.50448 * 144.99782 * 6 3 2 9 9 C 1.50700 * 109.46677 * 295.27861 * 8 6 3 10 10 H 1.07997 * 120.00078 * 354.89039 * 9 8 6 11 11 C 1.37881 * 119.99645 * 174.90208 * 9 8 6 12 12 N 1.31518 * 119.99816 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 120.00150 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47608 * 270.00321 * 13 11 9 15 15 H 1.48502 * 109.47018 * 30.00601 * 13 11 9 16 16 H 1.48505 * 109.47061 * 150.00454 * 13 11 9 17 17 H 1.08996 * 109.47127 * 60.00177 * 1 2 3 18 18 H 1.09002 * 109.46663 * 180.02562 * 1 2 3 19 19 H 1.08994 * 109.46749 * 299.99742 * 1 2 3 20 20 H 1.08998 * 109.47430 * 240.00041 * 2 1 3 21 21 H 1.09004 * 109.47249 * 120.00117 * 2 1 3 22 22 H 1.09005 * 117.50027 * 359.97438 * 5 3 2 23 23 H 1.08998 * 117.50550 * 214.97748 * 5 3 2 24 24 H 1.00899 * 111.00392 * 199.58572 * 7 6 3 25 25 H 1.00905 * 110.99562 * 323.54253 * 7 6 3 26 26 H 1.08999 * 109.47377 * 175.27514 * 8 6 3 27 27 H 1.09004 * 109.46736 * 55.27231 * 8 6 3 28 28 H 0.97000 * 120.00005 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1716 -0.4817 5 6 2.8439 1.9081 1.2157 6 6 3.5501 1.6580 -0.1183 7 7 4.3995 0.4640 -0.2227 8 6 4.0301 2.8802 -0.9037 9 6 3.6268 2.7386 -2.3488 10 1 3.1561 1.8290 -2.6915 11 6 3.8589 3.7704 -3.2335 12 7 3.5074 3.6468 -4.4948 13 14 4.6726 5.3439 -2.6406 14 1 3.6306 6.2991 -2.1857 15 1 5.5864 5.0336 -1.5119 16 1 5.4478 5.9498 -3.7530 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3632 0.5138 0.8900 20 1 1.8934 -0.5138 -0.8899 21 1 1.8934 -0.5139 0.8900 22 1 3.0092 1.1869 2.0161 23 1 2.7211 2.9434 1.5338 24 1 5.3549 0.6774 0.0216 25 1 4.0395 -0.2868 0.3474 26 1 5.1154 2.9531 -0.8348 27 1 3.5781 3.7803 -0.4868 28 1 3.6704 4.3728 -5.1171 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260830644.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:28 Heat of formation + Delta-G solvation = 5.480131 kcal Electronic energy + Delta-G solvation = -9818.360440 eV Core-core repulsion = 8062.323918 eV Total energy + Delta-G solvation = -1756.036521 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.18975 -32.94040 -32.07271 -29.82869 -28.64130 -23.67115 -22.45861 -20.16684 -18.39009 -16.55183 -15.36627 -14.75644 -14.14375 -13.90691 -13.14849 -12.52295 -12.43951 -11.91844 -11.59197 -11.51830 -11.04026 -10.66865 -10.51867 -10.42596 -10.13079 -9.56529 -9.21401 -8.86413 -8.45561 -7.63571 -5.94199 -3.89478 3.33818 3.41718 3.44457 4.51062 4.51364 5.05519 5.23310 5.37130 5.45704 5.56303 5.69739 5.87235 5.97149 6.19135 6.23874 6.39492 6.54072 6.65783 6.77036 7.00118 7.05018 7.23654 7.82161 7.92982 8.05178 8.68653 9.17531 9.67745 11.19587 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.053894 B = 0.014027 C = 0.012846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.417859 B = 1995.622640 C = 2179.133937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.133 4.133 4 H 0.108 0.892 5 C -0.243 4.243 6 C 0.100 3.900 7 N -0.799 5.799 8 C 0.027 3.973 9 C -0.495 4.495 10 H 0.078 0.922 11 C 0.062 3.938 12 N -0.905 5.905 13 Si 0.875 3.125 14 H -0.279 1.279 15 H -0.268 1.268 16 H -0.288 1.288 17 H 0.057 0.943 18 H 0.047 0.953 19 H 0.048 0.952 20 H 0.071 0.929 21 H 0.049 0.951 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.338 0.662 25 H 0.328 0.672 26 H 0.018 0.982 27 H 0.017 0.983 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.676 -4.015 10.257 11.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.152 4.152 4 H 0.126 0.874 5 C -0.283 4.283 6 C 0.006 3.994 7 N -0.326 5.326 8 C -0.011 4.011 9 C -0.533 4.533 10 H 0.096 0.904 11 C -0.138 4.138 12 N -0.545 5.545 13 Si 0.702 3.298 14 H -0.205 1.205 15 H -0.193 1.193 16 H -0.214 1.214 17 H 0.076 0.924 18 H 0.066 0.934 19 H 0.067 0.933 20 H 0.090 0.910 21 H 0.068 0.932 22 H 0.095 0.905 23 H 0.104 0.896 24 H 0.152 0.848 25 H 0.140 0.860 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.838 -3.931 9.291 10.254 hybrid contribution 0.500 1.063 1.277 1.736 sum -1.338 -2.867 10.568 11.031 Atomic orbital electron populations 1.21742 0.96237 1.00707 1.01738 1.20997 0.95189 0.95056 1.01321 1.22463 0.95120 0.97305 1.00339 0.87403 1.23978 1.10122 1.01382 0.92857 1.21637 0.91348 0.92741 0.93697 1.58309 1.05131 1.07378 1.61813 1.19130 0.96056 0.89839 0.96041 1.21003 1.38726 1.02870 0.90750 0.90387 1.25018 0.95573 0.98306 0.94878 1.69911 1.48545 1.32877 1.03166 0.86868 0.80084 0.84271 0.78538 1.20485 1.19304 1.21434 0.92423 0.93419 0.93255 0.91034 0.93214 0.90453 0.89636 0.84806 0.85953 0.96363 0.96438 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.87 37.16 0.37 -1.70 15 2 C -0.09 -1.42 5.12 -26.73 -0.14 -1.55 15 3 C -0.13 -2.53 5.20 -90.62 -0.47 -3.00 15 4 H 0.11 2.25 8.08 -51.93 -0.42 1.83 15 5 C -0.24 -4.22 9.63 -26.73 -0.26 -4.48 15 6 C 0.10 2.03 2.56 -131.60 -0.34 1.69 15 7 N -0.80 -14.61 9.51 0.74 0.01 -14.60 15 8 C 0.03 0.66 4.21 -27.88 -0.12 0.54 15 9 C -0.50 -14.34 9.43 -34.44 -0.32 -14.66 15 10 H 0.08 2.49 7.99 -52.49 -0.42 2.07 15 11 C 0.06 1.84 5.47 -17.82 -0.10 1.75 15 12 N -0.91 -28.42 13.96 55.43 0.77 -27.65 15 13 Si 0.87 22.00 27.37 -169.99 -4.65 17.34 15 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 15 H -0.27 -6.49 6.69 56.52 0.38 -6.11 15 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 15 17 H 0.06 0.86 8.14 -51.93 -0.42 0.43 15 18 H 0.05 0.58 8.14 -51.93 -0.42 0.16 15 19 H 0.05 0.65 8.14 -51.93 -0.42 0.22 15 20 H 0.07 1.26 8.14 -51.93 -0.42 0.83 15 21 H 0.05 0.71 7.58 -51.93 -0.39 0.31 15 22 H 0.08 1.18 8.03 -51.93 -0.42 0.76 15 23 H 0.09 1.47 8.08 -51.93 -0.42 1.05 15 24 H 0.34 5.64 9.07 -39.29 -0.36 5.28 15 25 H 0.33 5.07 7.69 -39.29 -0.30 4.77 15 26 H 0.02 0.45 7.55 -51.93 -0.39 0.05 15 27 H 0.02 0.42 7.08 -51.93 -0.37 0.05 15 28 H 0.26 7.68 8.31 -40.82 -0.34 7.34 15 LS Contribution 235.26 15.07 3.55 3.55 Total: -1.00 -30.95 235.26 -6.04 -36.99 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -4.34 Total: 5.78 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -1.38 Total: -21.41 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.78 Total: -42.25 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.65 Total: 17.34 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.95 -6.04 -36.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260830644.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.473 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds