Wall clock time and date at job start Mon Mar 30 2020 01:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47140 * 2 1 4 4 H 1.09005 * 115.55276 * 330.67244 * 3 2 1 5 5 C 1.52997 * 117.52101 * 116.36953 * 3 2 1 6 6 C 1.52995 * 117.50155 * 185.00209 * 3 2 1 7 7 N 1.46902 * 117.50115 * 359.97438 * 6 3 2 8 8 C 1.53002 * 117.50448 * 144.99782 * 6 3 2 9 9 C 1.50700 * 109.46677 * 295.27861 * 8 6 3 10 10 H 1.07997 * 120.00078 * 354.89039 * 9 8 6 11 11 C 1.37881 * 119.99645 * 174.90208 * 9 8 6 12 12 N 1.31518 * 119.99816 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 120.00150 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47608 * 270.00321 * 13 11 9 15 15 H 1.48502 * 109.47018 * 30.00601 * 13 11 9 16 16 H 1.48505 * 109.47061 * 150.00454 * 13 11 9 17 17 H 1.08996 * 109.47127 * 60.00177 * 1 2 3 18 18 H 1.09002 * 109.46663 * 180.02562 * 1 2 3 19 19 H 1.08994 * 109.46749 * 299.99742 * 1 2 3 20 20 H 1.08998 * 109.47430 * 240.00041 * 2 1 3 21 21 H 1.09004 * 109.47249 * 120.00117 * 2 1 3 22 22 H 1.09005 * 117.50027 * 359.97438 * 5 3 2 23 23 H 1.08998 * 117.50550 * 214.97748 * 5 3 2 24 24 H 1.00899 * 111.00392 * 199.58572 * 7 6 3 25 25 H 1.00905 * 110.99562 * 323.54253 * 7 6 3 26 26 H 1.08999 * 109.47377 * 175.27514 * 8 6 3 27 27 H 1.09004 * 109.46736 * 55.27231 * 8 6 3 28 28 H 0.97000 * 120.00005 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1716 -0.4817 5 6 2.8439 1.9081 1.2157 6 6 3.5501 1.6580 -0.1183 7 7 4.3995 0.4640 -0.2227 8 6 4.0301 2.8802 -0.9037 9 6 3.6268 2.7386 -2.3488 10 1 3.1561 1.8290 -2.6915 11 6 3.8589 3.7704 -3.2335 12 7 3.5074 3.6468 -4.4948 13 14 4.6726 5.3439 -2.6406 14 1 3.6306 6.2991 -2.1857 15 1 5.5864 5.0336 -1.5119 16 1 5.4478 5.9498 -3.7530 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3632 0.5138 0.8900 20 1 1.8934 -0.5138 -0.8899 21 1 1.8934 -0.5139 0.8900 22 1 3.0092 1.1869 2.0161 23 1 2.7211 2.9434 1.5338 24 1 5.3549 0.6774 0.0216 25 1 4.0395 -0.2868 0.3474 26 1 5.1154 2.9531 -0.8348 27 1 3.5781 3.7803 -0.4868 28 1 3.6704 4.3728 -5.1171 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260830644.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:28 Heat of formation + Delta-G solvation = -16.390934 kcal Electronic energy + Delta-G solvation = -9819.308840 eV Core-core repulsion = 8062.323918 eV Total energy + Delta-G solvation = -1756.984922 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.69675 -34.95089 -33.63357 -31.32552 -30.56732 -25.25618 -24.22767 -21.60777 -19.97924 -18.79317 -16.97191 -16.34088 -15.86782 -15.39334 -14.79329 -14.35862 -13.86442 -13.67627 -13.39206 -12.89554 -12.48485 -12.41435 -12.09100 -12.00081 -11.72467 -11.57927 -11.17634 -10.73826 -10.41389 -9.07221 -8.22487 -6.23525 1.35300 1.37486 1.48945 2.38512 3.03082 3.11054 3.64759 3.84424 4.07503 4.18882 4.36129 4.58527 4.69345 4.85510 4.94809 5.08601 5.16830 5.17579 5.29642 5.36862 5.40717 5.56774 5.67909 6.37815 6.47123 6.77940 6.84126 7.37685 8.94962 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.053894 B = 0.014027 C = 0.012846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.417859 B = 1995.622640 C = 2179.133937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.147 4.147 4 H 0.078 0.922 5 C -0.206 4.206 6 C 0.072 3.928 7 N -0.809 5.809 8 C 0.029 3.971 9 C -0.498 4.498 10 H 0.029 0.971 11 C -0.003 4.003 12 N -0.956 5.956 13 Si 0.949 3.051 14 H -0.268 1.268 15 H -0.248 1.248 16 H -0.286 1.286 17 H 0.038 0.962 18 H 0.069 0.931 19 H 0.062 0.938 20 H 0.048 0.952 21 H 0.077 0.923 22 H 0.109 0.891 23 H 0.089 0.911 24 H 0.347 0.653 25 H 0.346 0.654 26 H 0.020 0.980 27 H 0.022 0.978 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.227 -3.760 12.724 13.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 C -0.167 4.167 4 H 0.096 0.904 5 C -0.246 4.246 6 C -0.022 4.022 7 N -0.339 5.339 8 C -0.009 4.009 9 C -0.536 4.536 10 H 0.048 0.952 11 C -0.198 4.198 12 N -0.597 5.597 13 Si 0.773 3.227 14 H -0.193 1.193 15 H -0.172 1.172 16 H -0.211 1.211 17 H 0.057 0.943 18 H 0.088 0.912 19 H 0.081 0.919 20 H 0.067 0.933 21 H 0.095 0.905 22 H 0.128 0.872 23 H 0.108 0.892 24 H 0.161 0.839 25 H 0.160 0.840 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.390 -3.695 11.784 12.428 hybrid contribution 0.321 0.908 0.465 1.069 sum -1.070 -2.787 12.249 12.608 Atomic orbital electron populations 1.21714 0.94822 1.02083 1.01482 1.20960 0.96447 0.93084 1.01480 1.22514 0.93986 0.98503 1.01648 0.90393 1.23964 1.06166 1.02449 0.91995 1.21394 0.92377 0.92338 0.96087 1.58179 1.05535 1.07255 1.62928 1.19018 0.96047 0.92262 0.93587 1.21211 1.37879 1.01031 0.93525 0.95216 1.26011 0.96426 1.02554 0.94851 1.70082 1.50446 1.34404 1.04812 0.85676 0.79371 0.79122 0.78521 1.19321 1.17203 1.21148 0.94294 0.91223 0.91922 0.93311 0.90477 0.87239 0.89232 0.83866 0.83988 0.96200 0.95952 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.87 71.98 0.71 -3.11 15 2 C -0.08 -2.52 5.12 30.59 0.16 -2.36 15 3 C -0.15 -5.46 5.20 -10.80 -0.06 -5.51 15 4 H 0.08 3.32 8.08 -2.38 -0.02 3.30 15 5 C -0.21 -6.47 9.63 30.59 0.29 -6.18 15 6 C 0.07 2.84 2.56 3.53 0.01 2.85 15 7 N -0.81 -28.37 9.51 -151.57 -1.44 -29.81 15 8 C 0.03 1.38 4.21 29.85 0.13 1.50 15 9 C -0.50 -29.58 9.43 25.60 0.24 -29.34 15 10 H 0.03 1.99 7.99 -2.91 -0.02 1.97 15 11 C 0.00 -0.19 5.47 84.66 0.46 0.28 15 12 N -0.96 -61.82 13.96 21.45 0.30 -61.52 15 13 Si 0.95 45.32 27.37 68.60 1.88 47.20 15 14 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15 15 H -0.25 -10.98 6.69 99.48 0.67 -10.31 15 16 H -0.29 -13.42 7.11 99.48 0.71 -12.72 15 17 H 0.04 1.15 8.14 -2.39 -0.02 1.13 15 18 H 0.07 1.54 8.14 -2.39 -0.02 1.52 15 19 H 0.06 1.49 8.14 -2.39 -0.02 1.48 15 20 H 0.05 1.70 8.14 -2.39 -0.02 1.68 15 21 H 0.08 1.93 7.58 -2.39 -0.02 1.91 15 22 H 0.11 2.78 8.03 -2.38 -0.02 2.76 15 23 H 0.09 2.77 8.08 -2.39 -0.02 2.75 15 24 H 0.35 10.93 9.07 -89.69 -0.81 10.11 15 25 H 0.35 9.85 7.69 -89.69 -0.69 9.16 15 26 H 0.02 0.94 7.55 -2.39 -0.02 0.92 15 27 H 0.02 1.04 7.08 -2.38 -0.02 1.03 15 28 H 0.26 15.89 8.31 -92.71 -0.77 15.12 15 Total: -1.00 -68.04 235.26 2.27 -65.77 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -0.41 Total: 20.25 kcal Atomic # 6 Polarization: -43.83 SS G_CDS: 1.94 Total: -41.88 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -1.14 Total: -91.34 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.20 kcal Total: -68.04 2.27 -65.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260830644.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.376 kcal (2) G-P(sol) polarization free energy of solvation -68.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds