Wall clock time and date at job start Mon Mar 30 2020 01:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47357 * 2 1 4 4 H 1.09003 * 115.54655 * 330.67150 * 3 2 1 5 5 C 1.52994 * 117.49896 * 116.37871 * 3 2 1 6 6 C 1.52997 * 117.49588 * 185.00270 * 3 2 1 7 7 N 1.46904 * 117.49826 * 145.02146 * 6 3 2 8 8 C 1.52995 * 117.50183 * 0.02562 * 6 3 2 9 9 C 1.50697 * 109.47250 * 202.80982 * 8 6 3 10 10 H 1.07996 * 120.00259 * 5.12401 * 9 8 6 11 11 C 1.37885 * 120.00022 * 185.12468 * 9 8 6 12 12 N 1.31513 * 119.99574 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99903 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47338 * 90.00282 * 13 11 9 15 15 H 1.48507 * 109.46828 * 210.00214 * 13 11 9 16 16 H 1.48500 * 109.47414 * 330.00006 * 13 11 9 17 17 H 1.09005 * 109.46486 * 300.00734 * 1 2 3 18 18 H 1.09002 * 109.46528 * 59.99672 * 1 2 3 19 19 H 1.08996 * 109.47022 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.47181 * 239.99590 * 2 1 3 21 21 H 1.09007 * 109.46958 * 119.99518 * 2 1 3 22 22 H 1.09003 * 117.50137 * 359.97438 * 5 3 2 23 23 H 1.09003 * 117.49876 * 214.97816 * 5 3 2 24 24 H 1.00895 * 110.99952 * 174.64404 * 7 6 3 25 25 H 1.00901 * 110.99612 * 298.59870 * 7 6 3 26 26 H 1.08999 * 109.47281 * 322.81224 * 8 6 3 27 27 H 1.09000 * 109.47133 * 82.81065 * 8 6 3 28 28 H 0.97006 * 119.99725 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1715 -0.4817 5 6 2.8441 1.9075 1.2158 6 6 3.5503 1.6577 -0.1183 7 7 4.0111 2.8315 -0.8720 8 6 4.4347 0.4142 -0.2282 9 6 5.8336 0.7515 0.2191 10 1 6.0496 1.7281 0.6265 11 6 6.8379 -0.1867 0.1083 12 7 6.5750 -1.3758 -0.3882 13 14 8.5722 0.2317 0.6622 14 1 8.7347 -0.1272 2.0940 15 1 9.5501 -0.5320 -0.1537 16 1 8.8104 1.6869 0.4866 17 1 -0.3632 0.5140 0.8900 18 1 -0.3632 0.5139 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 1.8934 -0.5139 -0.8899 21 1 1.8934 -0.5138 0.8901 22 1 3.0093 1.1859 2.0159 23 1 2.7215 2.9427 1.5343 24 1 5.0139 2.9269 -0.8150 25 1 3.7060 2.7869 -1.8328 26 1 4.0312 -0.3758 0.4052 27 1 4.4564 0.0741 -1.2636 28 1 7.2817 -2.0357 -0.4665 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260830646.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:30 Heat of formation + Delta-G solvation = -2.725415 kcal Electronic energy + Delta-G solvation = -9782.109215 eV Core-core repulsion = 8025.716874 eV Total energy + Delta-G solvation = -1756.392341 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.91896 -33.09322 -32.16180 -29.53257 -27.90605 -23.46794 -23.05396 -20.20253 -18.03138 -16.36133 -14.97343 -14.59671 -14.31808 -13.79355 -13.40478 -12.38893 -12.03260 -11.85080 -11.52629 -11.33431 -10.98991 -10.84406 -10.61316 -10.36689 -9.95036 -9.44485 -9.26821 -8.53181 -8.35209 -7.74783 -6.03956 -4.06751 3.30125 3.36560 3.39899 4.40321 4.63918 5.09239 5.31414 5.51195 5.59322 5.71358 5.84604 5.96641 6.25656 6.30285 6.40249 6.57381 6.63151 6.67905 6.92866 7.03775 7.50987 7.65619 7.91198 8.15877 8.26314 8.42161 9.00153 9.57736 11.06784 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.064180 B = 0.012614 C = 0.011407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.165547 B = 2219.162363 C = 2453.995598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.159 4.159 4 H 0.092 0.908 5 C -0.162 4.162 6 C 0.068 3.932 7 N -0.819 5.819 8 C 0.035 3.965 9 C -0.518 4.518 10 H 0.058 0.942 11 C 0.057 3.943 12 N -0.895 5.895 13 Si 0.893 3.107 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 H 0.050 0.950 18 H 0.048 0.952 19 H 0.048 0.952 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.352 0.648 25 H 0.328 0.672 26 H 0.022 0.978 27 H 0.020 0.980 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.928 3.260 0.129 7.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.178 4.178 4 H 0.110 0.890 5 C -0.200 4.200 6 C -0.025 4.025 7 N -0.348 5.348 8 C -0.004 4.004 9 C -0.556 4.556 10 H 0.076 0.924 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.721 3.279 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.198 1.198 17 H 0.069 0.931 18 H 0.068 0.932 19 H 0.067 0.933 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.105 0.895 23 H 0.101 0.899 24 H 0.167 0.833 25 H 0.140 0.860 26 H 0.040 0.960 27 H 0.038 0.962 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.275 3.530 0.591 8.107 hybrid contribution 1.553 -0.541 -0.254 1.664 sum -5.722 2.988 0.337 6.464 Atomic orbital electron populations 1.21754 0.96549 1.00787 1.01188 1.21062 0.94413 0.94982 1.02331 1.22510 0.94593 0.96828 1.03842 0.88978 1.23078 1.04268 1.00773 0.91861 1.21766 0.91229 0.92671 0.96852 1.58743 1.19571 1.40289 1.16147 1.19129 0.93334 0.90557 0.97357 1.21143 0.93517 0.99478 1.41448 0.92393 1.25027 0.99049 0.95065 0.95254 1.69967 1.33118 1.04878 1.45419 0.86580 0.84271 0.78455 0.78622 1.20675 1.21308 1.19805 0.93090 0.93250 0.93267 0.91798 0.91808 0.89469 0.89933 0.83299 0.86026 0.95989 0.96175 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.87 37.16 0.37 -1.62 15 2 C -0.09 -1.55 4.98 -26.73 -0.13 -1.68 15 3 C -0.16 -2.92 5.66 -90.62 -0.51 -3.43 15 4 H 0.09 1.59 8.07 -51.93 -0.42 1.17 15 5 C -0.16 -3.19 9.80 -26.73 -0.26 -3.45 15 6 C 0.07 1.46 2.62 -131.60 -0.34 1.11 15 7 N -0.82 -16.21 9.74 0.74 0.01 -16.21 15 8 C 0.03 0.89 4.43 -27.89 -0.12 0.77 15 9 C -0.52 -14.38 8.35 -34.44 -0.29 -14.67 15 10 H 0.06 1.59 7.21 -52.49 -0.38 1.21 15 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 12 N -0.89 -26.63 13.29 55.43 0.74 -25.89 15 13 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 15 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 17 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 18 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15 19 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 20 H 0.06 1.16 8.02 -51.93 -0.42 0.74 15 21 H 0.06 1.15 7.48 -51.93 -0.39 0.76 15 22 H 0.09 1.74 8.03 -51.93 -0.42 1.33 15 23 H 0.08 1.54 8.14 -51.93 -0.42 1.12 15 24 H 0.35 7.32 7.63 -39.29 -0.30 7.02 15 25 H 0.33 5.88 9.08 -39.29 -0.36 5.52 15 26 H 0.02 0.60 6.99 -51.93 -0.36 0.23 15 27 H 0.02 0.56 8.14 -51.93 -0.42 0.13 15 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 LS Contribution 236.59 15.07 3.57 3.57 Total: -1.00 -29.03 236.59 -6.39 -35.42 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.29 Total: 8.02 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -1.39 Total: -21.45 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.74 Total: -42.10 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.03 -6.39 -35.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260830646.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.699 kcal (2) G-P(sol) polarization free energy of solvation -29.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds