Wall clock time and date at job start Mon Mar 30 2020 01:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99973 * 2 1 4 4 H 1.48503 * 109.47116 * 269.99922 * 3 2 1 5 5 H 1.48504 * 109.47401 * 29.99983 * 3 2 1 6 6 H 1.48502 * 109.46913 * 149.99730 * 3 2 1 7 7 C 1.37874 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99885 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00350 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47200 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.53587 * 307.61199 * 10 9 7 12 12 C 1.54887 * 110.48548 * 70.22392 * 10 9 7 13 13 C 1.54893 * 102.74533 * 156.62347 * 12 10 9 14 14 C 1.54266 * 104.19500 * 322.05712 * 13 12 10 15 15 C 1.53872 * 106.60044 * 23.61099 * 14 13 12 16 16 H 1.09003 * 110.07498 * 119.30332 * 15 14 13 17 17 N 1.46900 * 110.03339 * 240.71567 * 15 14 13 18 18 H 0.97002 * 120.00129 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.46959 * 59.99847 * 9 7 2 20 20 H 1.08994 * 109.46892 * 300.00293 * 9 7 2 21 21 H 1.09001 * 110.75744 * 274.93249 * 12 10 9 22 22 H 1.09000 * 110.75698 * 38.31067 * 12 10 9 23 23 H 1.09002 * 110.48578 * 203.38190 * 13 12 10 24 24 H 1.08998 * 110.60430 * 80.79077 * 13 12 10 25 25 H 1.09002 * 110.02957 * 264.32709 * 14 13 12 26 26 H 1.08996 * 110.03427 * 142.89930 * 14 13 12 27 27 H 1.00894 * 110.99961 * 297.16195 * 17 15 14 28 28 H 1.00897 * 111.00203 * 61.12402 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0027 11 1 2.9671 -3.5487 -0.8060 12 6 2.9705 -3.7540 1.3682 13 6 3.4211 -5.2351 1.4168 14 6 2.2495 -6.0082 0.7771 15 6 1.5018 -5.0081 -0.1221 16 1 1.5193 -5.3498 -1.1570 17 7 0.1136 -4.8606 0.3353 18 1 -0.4850 0.8400 0.0004 19 1 0.6239 -2.5575 -0.8880 20 1 0.6246 -2.5563 0.8919 21 1 3.8323 -3.0870 1.3934 22 1 2.2846 -3.5318 2.1857 23 1 3.5710 -5.5545 2.4482 24 1 4.3336 -5.3776 0.8379 25 1 1.5823 -6.3840 1.5528 26 1 2.6306 -6.8357 0.1787 27 1 -0.3867 -5.7335 0.2598 28 1 0.0796 -4.5047 1.2788 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260885255.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:44 Heat of formation + Delta-G solvation = -44.900314 kcal Electronic energy + Delta-G solvation = -9962.488897 eV Core-core repulsion = 8204.267716 eV Total energy + Delta-G solvation = -1758.221181 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.68597 -35.07460 -33.15684 -31.90041 -27.76752 -27.19371 -24.05565 -21.34767 -19.85753 -18.62984 -17.21240 -16.57143 -15.69489 -15.19259 -14.56568 -14.50216 -14.03802 -13.50036 -13.18990 -12.78073 -12.45928 -12.23316 -11.92367 -11.85339 -11.43000 -11.25363 -10.95556 -10.83528 -10.43396 -9.31771 -8.10865 -6.20742 1.40002 1.41378 1.52013 2.44736 3.20824 3.77040 3.84891 3.91043 4.21249 4.60175 4.66545 4.76278 4.80913 4.89742 5.06606 5.11167 5.26893 5.38547 5.51225 5.51606 5.65696 5.97432 6.04489 6.37563 6.46113 6.80109 7.01991 7.46846 9.00111 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.072479 B = 0.013097 C = 0.011619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.227187 B = 2137.401880 C = 2409.290699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.958 3.042 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.053 0.947 9 C 0.061 3.939 10 C -0.086 4.086 11 H 0.053 0.947 12 C -0.108 4.108 13 C -0.116 4.116 14 C -0.146 4.146 15 C 0.090 3.910 16 H 0.071 0.929 17 N -0.847 5.847 18 H 0.260 0.740 19 H -0.020 1.020 20 H -0.002 1.002 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.342 0.658 28 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.184 -10.025 2.658 11.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.072 0.928 9 C 0.024 3.976 10 C -0.104 4.104 11 H 0.071 0.929 12 C -0.146 4.146 13 C -0.154 4.154 14 C -0.186 4.186 15 C -0.022 4.022 16 H 0.089 0.911 17 N -0.378 5.378 18 H 0.069 0.931 19 H -0.001 1.001 20 H 0.017 0.983 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.156 0.844 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.955 -9.401 2.055 10.824 hybrid contribution 0.306 0.458 0.570 0.793 sum 5.261 -8.943 2.625 10.703 Atomic orbital electron populations 1.70134 1.07655 1.27249 1.52218 1.25935 0.95697 1.03031 0.95300 0.85561 0.78743 0.79094 0.78309 1.20063 1.20845 1.18867 1.21824 0.93226 0.92958 1.49539 0.92832 1.18616 0.93085 0.91118 0.94768 1.22054 0.96849 0.94512 0.97028 0.92876 1.22379 0.99029 0.96575 0.96588 1.22328 0.98116 0.93942 1.01021 1.22963 0.98109 0.98351 0.99128 1.22088 0.87709 0.94245 0.98165 0.91115 1.58761 1.14347 1.34044 1.30602 0.93135 1.00119 0.98336 0.92935 0.93269 0.90741 0.91049 0.91334 0.90340 0.84395 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.68 13.29 21.45 0.28 -58.40 15 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 15 3 Si 0.96 45.68 29.54 68.60 2.03 47.70 15 4 H -0.27 -12.73 7.11 99.48 0.71 -12.02 15 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 15 6 H -0.26 -12.02 7.11 99.48 0.71 -11.31 15 7 C -0.54 -31.49 8.77 25.60 0.22 -31.26 15 8 H 0.05 3.03 7.74 -2.91 -0.02 3.01 15 9 C 0.06 3.34 3.56 29.85 0.11 3.45 15 10 C -0.09 -3.60 2.73 -9.72 -0.03 -3.63 15 11 H 0.05 2.28 8.14 -2.39 -0.02 2.26 15 12 C -0.11 -3.97 5.99 31.89 0.19 -3.78 15 13 C -0.12 -3.16 6.83 31.67 0.22 -2.94 15 14 C -0.15 -3.78 6.57 31.32 0.21 -3.58 15 15 C 0.09 3.05 3.91 45.64 0.18 3.23 15 16 H 0.07 2.36 8.14 -2.39 -0.02 2.35 15 17 N -0.85 -29.47 7.93 -165.67 -1.31 -30.78 15 18 H 0.26 15.40 8.31 -92.71 -0.77 14.63 15 19 H -0.02 -1.21 8.14 -2.38 -0.02 -1.23 15 20 H 0.00 -0.10 6.95 -2.39 -0.02 -0.11 15 21 H 0.05 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.05 1.91 7.96 -2.39 -0.02 1.89 15 23 H 0.07 1.75 8.14 -2.39 -0.02 1.73 15 24 H 0.07 1.78 8.14 -2.39 -0.02 1.76 15 25 H 0.07 1.62 7.92 -2.39 -0.02 1.60 15 26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 15 27 H 0.34 9.47 9.07 -89.70 -0.81 8.66 15 28 H 0.34 12.09 8.10 -89.70 -0.73 11.37 15 Total: -1.00 -66.05 228.94 2.15 -63.90 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -0.40 Total: 15.77 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 1.56 Total: -38.20 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -1.03 Total: -89.18 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -66.05 2.15 -63.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260885255.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.997 kcal (2) G-P(sol) polarization free energy of solvation -66.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds