Wall clock time and date at job start Mon Mar 30 2020 01:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99670 * 2 1 4 4 H 1.48498 * 109.47518 * 240.00207 * 3 2 1 5 5 H 1.48500 * 109.47467 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47005 * 120.00274 * 3 2 1 7 7 C 1.37877 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00046 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99807 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46925 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.53944 * 56.15589 * 10 9 7 12 12 C 1.54270 * 110.48468 * 293.54499 * 10 9 7 13 13 C 1.53869 * 106.63967 * 217.73631 * 12 10 9 14 14 C 1.54268 * 106.60115 * 359.97438 * 13 12 10 15 15 C 1.54895 * 104.19476 * 23.60777 * 14 13 12 16 16 H 1.09001 * 110.75082 * 80.37254 * 15 14 13 17 17 N 1.46892 * 110.75748 * 203.56043 * 15 14 13 18 18 H 0.96999 * 120.00363 * 359.97438 * 1 2 3 19 19 H 1.08993 * 109.47284 * 60.00183 * 9 7 2 20 20 H 1.08995 * 109.47053 * 299.99672 * 9 7 2 21 21 H 1.09002 * 110.03399 * 98.42629 * 12 10 9 22 22 H 1.08995 * 110.02943 * 337.04529 * 12 10 9 23 23 H 1.08999 * 110.03405 * 119.26051 * 13 12 10 24 24 H 1.09001 * 110.03705 * 240.64196 * 13 12 10 25 25 H 1.08997 * 110.48788 * 142.28685 * 14 13 12 26 26 H 1.09000 * 110.48806 * 264.79985 * 14 13 12 27 27 H 1.00905 * 111.00263 * 298.54988 * 17 15 14 28 28 H 1.00902 * 110.99973 * 62.49911 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9260 -3.5833 0.8472 12 6 3.0350 -3.6972 -1.3254 13 6 3.2178 -5.1808 -1.6901 14 6 2.5334 -5.9967 -0.5740 15 6 1.4959 -5.0179 0.0302 16 1 0.5986 -4.9767 -0.5873 17 7 1.1601 -5.4006 1.4081 18 1 -0.4850 0.8400 0.0004 19 1 0.6242 -2.5567 -0.8902 20 1 0.6249 -2.5571 0.8897 21 1 4.0074 -3.2227 -1.1932 22 1 2.4740 -3.1866 -2.1080 23 1 2.7447 -5.3905 -2.6495 24 1 4.2788 -5.4262 -1.7359 25 1 2.0346 -6.8712 -0.9917 26 1 3.2611 -6.2974 0.1798 27 1 0.7465 -6.3205 1.4374 28 1 1.9717 -5.3499 2.0055 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260885256.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:45 Heat of formation + Delta-G solvation = -51.297616 kcal Electronic energy + Delta-G solvation = -9876.678493 eV Core-core repulsion = 8118.179904 eV Total energy + Delta-G solvation = -1758.498589 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.54832 -35.16496 -33.47800 -31.94585 -27.75533 -27.09552 -23.95033 -21.27497 -20.58563 -18.32955 -16.97019 -16.45998 -16.19785 -15.43107 -14.62554 -14.16106 -13.92115 -13.39094 -13.21616 -13.05776 -12.68926 -12.35695 -11.93937 -11.76325 -11.53824 -11.28315 -10.97706 -10.90315 -10.49958 -9.39342 -8.14963 -6.25537 1.39262 1.42805 1.50503 2.42862 3.17188 3.66516 3.84896 3.93041 4.19225 4.55846 4.59966 4.72009 4.80529 4.86498 5.01758 5.12711 5.28460 5.35938 5.46499 5.51442 5.63892 5.86450 5.91708 6.31076 6.40395 6.76836 6.92383 7.42700 8.96640 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.068489 B = 0.012594 C = 0.011392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.726058 B = 2222.768501 C = 2457.255938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.963 3.037 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.058 0.942 9 C 0.043 3.957 10 C -0.074 4.074 11 H 0.054 0.946 12 C -0.110 4.110 13 C -0.115 4.115 14 C -0.145 4.145 15 C 0.090 3.910 16 H 0.064 0.936 17 N -0.849 5.849 18 H 0.262 0.738 19 H -0.018 1.018 20 H -0.014 1.014 21 H 0.055 0.945 22 H 0.043 0.957 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.348 0.652 28 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.379 -10.209 -1.246 12.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.076 0.924 9 C 0.006 3.994 10 C -0.093 4.093 11 H 0.073 0.927 12 C -0.148 4.148 13 C -0.153 4.153 14 C -0.184 4.184 15 C -0.022 4.022 16 H 0.082 0.918 17 N -0.379 5.379 18 H 0.070 0.930 19 H 0.001 0.999 20 H 0.005 0.995 21 H 0.074 0.926 22 H 0.061 0.939 23 H 0.085 0.915 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.162 0.838 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.730 -9.474 -1.248 11.142 hybrid contribution 0.627 0.408 -0.123 0.758 sum 6.357 -9.065 -1.371 11.157 Atomic orbital electron populations 1.70116 1.07851 1.27580 1.52130 1.25999 0.95731 1.03335 0.95085 0.85542 0.78286 0.78328 0.79137 1.19128 1.20927 1.19258 1.21652 0.93311 0.92359 1.49737 0.92383 1.18901 0.93745 0.92694 0.94016 1.21924 0.96395 0.93965 0.96969 0.92719 1.22024 0.99255 0.96801 0.96724 1.22061 1.01104 0.93569 0.98605 1.23086 0.98432 0.98198 0.98728 1.22453 0.96424 0.94088 0.89217 0.91797 1.58604 1.35898 1.34373 1.09023 0.92970 0.99917 0.99541 0.92636 0.93858 0.91488 0.90551 0.90416 0.90857 0.83827 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.29 13.29 21.45 0.28 -59.01 15 2 C 0.00 -0.26 5.46 84.65 0.46 0.20 15 3 Si 0.96 45.61 29.54 68.60 2.03 47.63 15 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 5 H -0.28 -13.16 7.11 99.48 0.71 -12.45 15 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 7 C -0.53 -31.28 8.67 25.60 0.22 -31.06 15 8 H 0.06 3.26 7.68 -2.91 -0.02 3.24 15 9 C 0.04 2.41 4.36 29.85 0.13 2.54 15 10 C -0.07 -3.12 2.50 -9.69 -0.02 -3.14 15 11 H 0.05 2.33 8.01 -2.39 -0.02 2.31 15 12 C -0.11 -4.11 5.87 31.32 0.18 -3.93 15 13 C -0.12 -3.19 6.80 31.32 0.21 -2.98 15 14 C -0.14 -3.75 6.51 31.67 0.21 -3.55 15 15 C 0.09 3.10 3.48 46.23 0.16 3.26 15 16 H 0.06 2.43 8.06 -2.39 -0.02 2.42 15 17 N -0.85 -26.53 9.40 -163.25 -1.53 -28.06 15 18 H 0.26 15.58 8.31 -92.71 -0.77 14.81 15 19 H -0.02 -1.06 8.05 -2.39 -0.02 -1.08 15 20 H -0.01 -0.86 8.14 -2.39 -0.02 -0.87 15 21 H 0.05 2.03 8.14 -2.39 -0.02 2.01 15 22 H 0.04 1.80 7.77 -2.39 -0.02 1.78 15 23 H 0.07 1.73 8.14 -2.39 -0.02 1.71 15 24 H 0.08 1.80 8.14 -2.39 -0.02 1.78 15 25 H 0.08 1.71 8.14 -2.39 -0.02 1.69 15 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 15 27 H 0.35 8.60 9.07 -89.69 -0.81 7.79 15 28 H 0.34 9.78 8.87 -89.69 -0.80 8.98 15 Total: -1.00 -66.96 231.86 1.86 -65.10 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -0.47 Total: 12.99 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 1.55 Total: -38.66 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -1.25 Total: -87.07 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -66.96 1.86 -65.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260885256.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.806 kcal (2) G-P(sol) polarization free energy of solvation -66.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds