Wall clock time and date at job start Mon Mar 30 2020 01:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 110.05451 * 2 1 4 4 H 1.07994 * 120.00241 * 115.73673 * 3 2 1 5 5 C 1.37876 * 119.99703 * 295.73350 * 3 2 1 6 6 N 1.31518 * 120.00086 * 198.48912 * 5 3 2 7 7 Si 1.86807 * 120.00063 * 18.48837 * 5 3 2 8 8 H 1.48492 * 109.47028 * 84.09896 * 7 5 3 9 9 H 1.48506 * 109.46844 * 204.09931 * 7 5 3 10 10 H 1.48498 * 109.46866 * 324.09736 * 7 5 3 11 11 C 1.54258 * 110.03249 * 238.58027 * 2 1 3 12 12 C 1.54891 * 104.19656 * 264.32331 * 11 2 1 13 13 C 1.54892 * 102.74947 * 322.06188 * 12 11 2 14 14 C 1.53874 * 110.02794 * 121.40924 * 2 1 3 15 15 H 1.09002 * 110.07644 * 359.97438 * 14 2 1 16 16 N 1.46899 * 110.03378 * 238.57117 * 14 2 1 17 17 H 1.08997 * 109.47378 * 298.58833 * 1 2 3 18 18 H 1.09002 * 109.46772 * 58.58947 * 1 2 3 19 19 H 1.08994 * 109.46753 * 178.58416 * 1 2 3 20 20 H 0.96999 * 119.99747 * 180.02562 * 6 5 3 21 21 H 1.09000 * 110.48723 * 145.65317 * 11 2 1 22 22 H 1.08997 * 110.60355 * 23.05853 * 11 2 1 23 23 H 1.09002 * 110.76284 * 203.74467 * 12 11 2 24 24 H 1.09004 * 110.75670 * 80.37435 * 12 11 2 25 25 H 1.08998 * 110.48503 * 279.26346 * 13 12 11 26 26 H 1.08993 * 110.49048 * 156.61685 * 13 12 11 27 27 H 1.00897 * 111.00537 * 181.38562 * 16 14 2 28 28 H 1.00909 * 110.99981 * 305.33503 * 16 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0468 1.4157 0.0000 4 1 2.6135 1.7837 0.8425 5 6 1.7962 2.2410 -1.0756 6 7 2.5233 3.3214 -1.2590 7 14 0.4238 1.8245 -2.2726 8 1 -0.8671 2.3306 -1.7410 9 1 0.7020 2.4606 -3.5854 10 1 0.3456 0.3514 -2.4430 11 6 2.0585 -0.7555 -1.2368 12 6 2.3281 -2.1902 -0.7189 13 6 2.8875 -1.9406 0.7037 14 6 2.0570 -0.7534 1.2338 15 1 1.2233 -1.1190 1.8334 16 7 2.9055 0.1337 2.0407 17 1 -0.3634 0.4917 0.9023 18 1 -0.3633 0.5356 -0.8771 19 1 -0.3632 -1.0273 -0.0254 20 1 2.3467 3.9022 -2.0156 21 1 2.9812 -0.3002 -1.5965 22 1 1.3079 -0.7700 -2.0270 23 1 3.0676 -2.6932 -1.3420 24 1 1.4032 -2.7652 -0.6749 25 1 3.9440 -1.6766 0.6574 26 1 2.7401 -2.8195 1.3312 27 1 3.2776 -0.3527 2.8426 28 1 3.6466 0.5310 1.4829 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260906202.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:12 Heat of formation + Delta-G solvation = -10.897268 kcal Electronic energy + Delta-G solvation = -10466.928095 eV Core-core repulsion = 8710.181396 eV Total energy + Delta-G solvation = -1756.746699 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.94775 -34.58427 -33.36850 -32.04648 -27.74688 -26.62626 -24.86661 -21.65344 -20.36308 -17.82678 -17.04125 -16.65960 -15.86713 -15.07273 -14.69276 -14.35315 -13.74518 -13.56521 -13.35464 -12.98960 -12.68126 -12.14092 -11.94695 -11.57388 -11.36901 -11.10327 -10.76697 -10.40771 -10.29446 -9.12743 -8.15524 -6.06707 1.35118 1.39262 1.48023 2.45022 3.18286 3.91310 3.99547 4.11294 4.34618 4.65567 4.72245 4.75673 4.83947 4.91828 5.04071 5.07412 5.18858 5.22304 5.36150 5.54629 5.59173 5.82892 5.99601 6.50433 6.72942 6.89525 7.15417 7.56762 8.99607 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.051748 B = 0.022866 C = 0.019546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.950857 B = 1224.208824 C = 1432.210191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.028 3.972 3 C -0.492 4.492 4 H 0.073 0.927 5 C 0.014 3.986 6 N -0.948 5.948 7 Si 0.909 3.091 8 H -0.291 1.291 9 H -0.320 1.320 10 H -0.207 1.207 11 C -0.131 4.131 12 C -0.115 4.115 13 C -0.148 4.148 14 C 0.106 3.894 15 H 0.072 0.928 16 N -0.841 5.841 17 H 0.043 0.957 18 H 0.026 0.974 19 H 0.062 0.938 20 H 0.256 0.744 21 H 0.039 0.961 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.329 0.671 28 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.706 -11.927 1.707 12.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.027 3.973 3 C -0.530 4.530 4 H 0.091 0.909 5 C -0.181 4.181 6 N -0.590 5.590 7 Si 0.741 3.259 8 H -0.219 1.219 9 H -0.250 1.250 10 H -0.131 1.131 11 C -0.169 4.169 12 C -0.152 4.152 13 C -0.187 4.187 14 C -0.006 4.006 15 H 0.090 0.910 16 N -0.371 5.371 17 H 0.062 0.938 18 H 0.044 0.956 19 H 0.081 0.919 20 H 0.065 0.935 21 H 0.058 0.942 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.142 0.858 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.330 -11.347 1.737 11.713 hybrid contribution 0.195 0.123 -0.957 0.984 sum -2.136 -11.224 0.780 11.452 Atomic orbital electron populations 1.22212 0.97908 1.00021 0.99603 1.19197 0.91975 0.93924 0.92187 1.21513 1.32327 0.96111 1.03040 0.90941 1.25705 0.97823 0.95466 0.99142 1.70145 1.39995 1.17541 1.31285 0.86827 0.80566 0.81277 0.77274 1.21889 1.25001 1.13143 1.22966 0.99760 0.95773 0.98422 1.22420 1.00887 0.95886 0.96048 1.23151 0.99163 0.99124 0.97283 1.21944 0.95071 0.89976 0.93590 0.91004 1.59012 1.27907 1.37944 1.12250 0.93796 0.95571 0.91941 0.93532 0.94190 0.92376 0.91334 0.90599 0.92690 0.90305 0.85793 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.78 7.58 71.98 0.55 -5.23 15 2 C 0.03 1.23 0.61 -52.20 -0.03 1.20 15 3 C -0.49 -26.99 7.75 25.60 0.20 -26.79 15 4 H 0.07 4.34 5.71 -2.91 -0.02 4.32 15 5 C 0.01 0.84 5.29 84.65 0.45 1.28 15 6 N -0.95 -59.99 13.96 21.45 0.30 -59.69 15 7 Si 0.91 44.81 23.73 68.60 1.63 46.44 15 8 H -0.29 -14.40 7.11 99.48 0.71 -13.69 15 9 H -0.32 -16.33 7.11 99.48 0.71 -15.62 15 10 H -0.21 -8.93 3.91 99.48 0.39 -8.54 15 11 C -0.13 -5.30 4.54 31.67 0.14 -5.16 15 12 C -0.11 -3.52 6.91 31.89 0.22 -3.30 15 13 C -0.15 -4.48 6.52 31.67 0.21 -4.27 15 14 C 0.11 3.91 3.68 45.64 0.17 4.07 15 15 H 0.07 2.50 7.67 -2.39 -0.02 2.48 15 16 N -0.84 -32.16 7.81 -165.67 -1.29 -33.45 15 17 H 0.04 1.82 8.14 -2.39 -0.02 1.80 15 18 H 0.03 1.13 2.72 -2.39 -0.01 1.12 15 19 H 0.06 2.12 8.14 -2.39 -0.02 2.10 15 20 H 0.26 15.53 8.31 -92.71 -0.77 14.76 15 21 H 0.04 1.80 7.84 -2.39 -0.02 1.78 15 22 H 0.06 2.33 5.11 -2.39 -0.01 2.32 15 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 24 H 0.08 2.06 8.14 -2.39 -0.02 2.04 15 25 H 0.05 1.71 8.03 -2.39 -0.02 1.69 15 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 15 27 H 0.33 10.18 9.06 -89.70 -0.81 9.37 15 28 H 0.34 14.40 7.29 -89.69 -0.65 13.74 15 Total: -1.00 -63.35 208.97 1.91 -61.44 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.62 Total: 23.45 kcal Atomic # 6 Polarization: -40.09 SS G_CDS: 1.90 Total: -38.19 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -0.99 Total: -93.15 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.63 Total: 46.44 kcal Total: -63.35 1.91 -61.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260906202.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.542 kcal (2) G-P(sol) polarization free energy of solvation -63.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds