Wall clock time and date at job start Mon Mar 30 2020 01:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 110.01679 * 2 1 4 4 H 1.08000 * 120.00189 * 239.29785 * 3 2 1 5 5 C 1.37877 * 120.00354 * 59.29803 * 3 2 1 6 6 N 1.31526 * 119.99514 * 0.02562 * 5 3 2 7 7 Si 1.86797 * 120.00551 * 180.02562 * 5 3 2 8 8 H 1.48506 * 109.47042 * 60.00023 * 7 5 3 9 9 H 1.48499 * 109.47390 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47230 * 299.99975 * 7 5 3 11 11 C 1.54264 * 110.03282 * 121.43875 * 2 1 3 12 12 C 1.54894 * 104.19598 * 95.67620 * 11 2 1 13 13 C 1.54893 * 102.74668 * 37.94370 * 12 11 2 14 14 C 1.53875 * 110.03442 * 238.60686 * 2 1 3 15 15 H 1.08994 * 110.03329 * 0.04818 * 14 2 1 16 16 N 1.46907 * 110.03154 * 121.43161 * 14 2 1 17 17 H 1.09002 * 109.47153 * 181.39087 * 1 2 3 18 18 H 1.09001 * 109.46832 * 61.39278 * 1 2 3 19 19 H 1.09004 * 109.47261 * 301.39260 * 1 2 3 20 20 H 0.96993 * 119.99603 * 180.02562 * 6 5 3 21 21 H 1.08999 * 110.49238 * 214.35111 * 11 2 1 22 22 H 1.09000 * 110.48840 * 336.99769 * 11 2 1 23 23 H 1.09001 * 110.75351 * 279.62885 * 12 11 2 24 24 H 1.09002 * 110.75958 * 156.25935 * 12 11 2 25 25 H 1.09001 * 110.48663 * 203.38185 * 13 12 11 26 26 H 1.08996 * 110.59747 * 80.79052 * 13 12 11 27 27 H 1.00902 * 110.99717 * 180.02562 * 16 14 2 28 28 H 1.00893 * 110.99726 * 303.95588 * 16 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0458 1.4160 0.0000 4 1 2.6794 1.7599 -0.8042 5 6 1.7090 2.2725 1.0267 6 7 0.9379 1.8534 2.0063 7 14 2.3478 4.0278 1.0263 8 1 1.8729 4.7272 -0.1946 9 1 1.8462 4.7374 2.2305 10 1 3.8326 4.0143 1.0431 11 6 2.0584 -0.7559 1.2365 12 6 2.3281 -2.1905 0.7182 13 6 2.8875 -1.9403 -0.7043 14 6 2.0571 -0.7530 -1.2340 15 1 1.2230 -1.1178 -1.8333 16 7 2.9057 0.1344 -2.0405 17 1 -0.3633 -1.0274 0.0249 18 1 -0.3633 0.4921 -0.9022 19 1 -0.3634 0.5353 0.8773 20 1 0.7006 2.4561 2.7283 21 1 2.9811 -0.3008 1.5965 22 1 1.3061 -0.7704 2.0252 23 1 1.4031 -2.7654 0.6740 24 1 3.0676 -2.6937 1.3412 25 1 2.7402 -2.8191 -1.3322 26 1 3.9443 -1.6771 -0.6600 27 1 3.2593 -0.3452 -2.8548 28 1 2.4072 0.9716 -2.3024 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260906207.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:15 Heat of formation + Delta-G solvation = -7.570185 kcal Electronic energy + Delta-G solvation = -10392.616892 eV Core-core repulsion = 8636.014466 eV Total energy + Delta-G solvation = -1756.602426 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.87055 -32.60838 -31.64359 -29.33978 -25.76943 -24.83367 -22.87700 -19.57609 -18.29695 -15.69880 -14.90638 -14.52884 -13.96017 -13.59567 -13.04985 -12.19834 -11.50809 -11.38918 -11.05353 -10.71414 -10.57844 -10.39274 -9.97293 -9.81485 -9.76334 -9.17220 -8.97299 -8.50773 -8.18841 -7.54313 -5.81396 -3.83784 3.40990 3.45469 3.49159 4.56911 5.44212 5.52406 5.77038 5.83434 6.08430 6.38388 6.52440 6.63962 6.80831 6.89128 6.92273 6.95365 7.20422 7.21345 7.56765 7.68689 7.85469 8.06097 8.20365 8.34715 8.46068 8.74502 9.20281 9.80030 11.24100 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.055467 B = 0.019377 C = 0.017117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.681304 B = 1444.682002 C = 1635.433999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.070 3.930 3 C -0.491 4.491 4 H 0.078 0.922 5 C 0.057 3.943 6 N -0.895 5.895 7 Si 0.888 3.112 8 H -0.281 1.281 9 H -0.292 1.292 10 H -0.279 1.279 11 C -0.083 4.083 12 C -0.132 4.132 13 C -0.113 4.113 14 C 0.094 3.906 15 H 0.011 0.989 16 N -0.827 5.827 17 H 0.006 0.994 18 H 0.019 0.981 19 H 0.086 0.914 20 H 0.255 0.745 21 H 0.052 0.948 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.038 0.962 26 H 0.067 0.933 27 H 0.307 0.693 28 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.114 -4.182 -3.909 5.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.070 3.930 3 C -0.530 4.530 4 H 0.096 0.904 5 C -0.143 4.143 6 N -0.534 5.534 7 Si 0.717 3.283 8 H -0.207 1.207 9 H -0.218 1.218 10 H -0.205 1.205 11 C -0.121 4.121 12 C -0.170 4.170 13 C -0.151 4.151 14 C -0.017 4.017 15 H 0.029 0.971 16 N -0.358 5.358 17 H 0.025 0.975 18 H 0.038 0.962 19 H 0.104 0.896 20 H 0.065 0.935 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.086 0.914 27 H 0.117 0.883 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.486 -4.060 -3.094 5.317 hybrid contribution -0.413 0.800 -0.680 1.128 sum 1.072 -3.261 -3.774 5.102 Atomic orbital electron populations 1.21903 0.98366 0.96826 1.01806 1.18706 0.91421 0.94319 0.88587 1.21328 1.28971 0.94917 1.07781 0.90396 1.24993 0.95362 0.98022 0.95918 1.69908 1.36966 1.35289 1.11277 0.86731 0.79218 0.85426 0.76904 1.20694 1.21804 1.20516 1.22242 1.00327 0.90685 0.98831 1.22579 0.98783 0.99690 0.95964 1.22368 1.00320 0.96215 0.96246 1.22106 0.91707 0.92062 0.95817 0.97106 1.59117 1.43462 1.09237 1.23941 0.97513 0.96190 0.89570 0.93494 0.92917 0.92620 0.93177 0.93487 0.94296 0.91419 0.88253 0.83904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 7.93 37.16 0.29 -2.90 15 2 C 0.07 1.72 0.62 -154.54 -0.10 1.63 15 3 C -0.49 -13.19 7.26 -34.44 -0.25 -13.44 15 4 H 0.08 2.07 5.34 -52.49 -0.28 1.79 15 5 C 0.06 1.56 5.17 -17.81 -0.09 1.47 15 6 N -0.89 -25.30 10.39 55.43 0.58 -24.73 15 7 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 15 8 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 11 C -0.08 -1.99 4.94 -25.07 -0.12 -2.11 15 12 C -0.13 -2.63 6.91 -24.73 -0.17 -2.80 15 13 C -0.11 -2.20 6.53 -25.07 -0.16 -2.36 15 14 C 0.09 2.01 3.68 -66.59 -0.24 1.76 15 15 H 0.01 0.23 7.67 -51.93 -0.40 -0.17 15 16 N -0.83 -16.51 7.81 -3.72 -0.03 -16.54 15 17 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 15 18 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 19 H 0.09 2.31 6.03 -51.93 -0.31 1.99 15 20 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 21 H 0.05 1.37 7.85 -51.93 -0.41 0.96 15 22 H 0.06 1.41 7.65 -51.93 -0.40 1.01 15 23 H 0.05 0.95 8.14 -51.93 -0.42 0.52 15 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 26 H 0.07 1.34 8.05 -51.93 -0.42 0.92 15 27 H 0.31 5.15 9.07 -39.29 -0.36 4.79 15 28 H 0.35 6.99 7.30 -39.30 -0.29 6.71 15 LS Contribution 220.07 15.07 3.32 3.32 Total: -1.00 -27.90 220.07 -6.11 -34.01 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -4.11 Total: 6.10 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -0.85 Total: -18.76 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.55 Total: -41.26 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -27.90 -6.11 -34.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260906207.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.441 kcal (2) G-P(sol) polarization free energy of solvation -27.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds