Wall clock time and date at job start Mon Mar 30 2020 02:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47218 * 2 1 4 4 C 1.52999 * 109.46814 * 120.00216 * 2 1 3 5 5 C 1.50699 * 109.46736 * 184.99955 * 4 2 1 6 6 H 1.08002 * 120.00667 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99976 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00139 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00280 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46935 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47190 * 119.99744 * 9 7 5 12 12 H 1.48501 * 109.46972 * 240.00175 * 9 7 5 13 13 N 1.46903 * 109.46757 * 239.99881 * 2 1 3 14 14 C 1.47962 * 111.00056 * 60.00413 * 13 2 1 15 15 C 1.53935 * 86.30001 * 137.63674 * 14 13 2 16 16 C 1.48308 * 111.10591 * 159.25177 * 13 2 1 17 17 H 1.09005 * 109.47219 * 300.00516 * 1 2 3 18 18 H 1.09002 * 109.47269 * 59.99659 * 1 2 3 19 19 H 1.09000 * 109.47626 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.46742 * 304.99348 * 4 2 1 21 21 H 1.08992 * 109.47303 * 65.00033 * 4 2 1 22 22 H 0.97002 * 120.00654 * 179.97438 * 8 7 5 23 23 H 1.09002 * 113.76087 * 23.26139 * 14 13 2 24 24 H 1.09005 * 113.75858 * 252.00601 * 14 13 2 25 25 H 1.09000 * 113.73561 * 90.58655 * 15 14 13 26 26 H 1.09007 * 113.72883 * 221.75679 * 15 14 13 27 27 H 1.09003 * 113.75437 * 108.13284 * 16 13 2 28 28 H 1.08998 * 113.85723 * 336.78984 * 16 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5418 -0.6150 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2302 -1.1927 2.3583 8 7 3.5762 -1.8362 3.3005 9 14 6.0920 -1.0616 2.4366 10 1 6.5838 -0.2931 1.2649 11 1 6.4870 -0.3650 3.6872 12 1 6.6852 -2.4228 2.4196 13 7 2.0196 -0.6925 -1.1995 14 6 1.5452 -0.0216 -2.4299 15 6 2.9671 -0.2398 -2.9777 16 6 3.4174 -0.3042 -1.5072 17 1 -0.3634 0.5139 0.8900 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 1.6053 -0.2617 2.1369 21 1 1.7516 -1.7715 1.2056 22 1 4.0605 -2.2430 4.0360 23 1 1.2861 1.0274 -2.2862 24 1 0.7775 -0.5795 -2.9663 25 1 3.0905 -1.1796 -3.5159 26 1 3.3636 0.6170 -3.5226 27 1 4.1459 -1.0894 -1.3049 28 1 3.7078 0.6617 -1.0940 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260933637.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:43 Heat of formation + Delta-G solvation = 24.789657 kcal Electronic energy + Delta-G solvation = -10051.186630 eV Core-core repulsion = 8295.987432 eV Total energy + Delta-G solvation = -1755.199197 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.20617 -33.79441 -31.94053 -27.76655 -26.45255 -24.91687 -23.01220 -19.72485 -19.17013 -16.20161 -15.36689 -15.10248 -14.38373 -13.57231 -13.09224 -12.22774 -12.05398 -11.68740 -11.35249 -11.16743 -11.11249 -10.76015 -10.54265 -10.40792 -10.03325 -9.91390 -9.04024 -8.79882 -8.29345 -7.91596 -5.92766 -3.92903 3.33706 3.41266 3.43821 4.50705 4.66442 5.08096 5.37963 5.44968 5.78165 5.88193 5.92124 6.02013 6.07754 6.15063 6.29311 6.44887 6.58003 6.68938 6.81753 6.95726 7.32190 7.63458 7.75265 8.07158 8.14193 8.50036 9.11692 9.69220 11.19153 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.053576 B = 0.016032 C = 0.012870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.493819 B = 1746.090084 C = 2175.010604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 H 0.032 0.968 4 C 0.032 3.968 5 C -0.515 4.515 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.462 5.462 14 C -0.006 4.006 15 C -0.158 4.158 16 C 0.029 3.971 17 H 0.053 0.947 18 H 0.038 0.962 19 H 0.056 0.944 20 H 0.017 0.983 21 H 0.025 0.975 22 H 0.258 0.742 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.008 3.867 -8.865 9.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.058 4.058 3 H 0.050 0.950 4 C -0.005 4.005 5 C -0.554 4.554 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.185 5.185 14 C -0.135 4.135 15 C -0.196 4.196 16 C -0.099 4.099 17 H 0.072 0.928 18 H 0.057 0.943 19 H 0.075 0.925 20 H 0.035 0.965 21 H 0.043 0.957 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.162 3.089 -8.546 9.341 hybrid contribution 1.170 0.901 0.218 1.492 sum -0.993 3.990 -8.328 9.288 Atomic orbital electron populations 1.21847 0.96460 1.01602 1.00044 1.22330 0.93413 0.95951 0.94131 0.94985 1.19093 0.95728 0.96003 0.89690 1.21489 0.92308 1.33757 1.07812 0.91883 1.25003 0.98015 0.95605 0.95878 1.69979 1.35183 1.36378 1.12138 0.86624 0.86368 0.77715 0.77819 1.19801 1.21201 1.21094 1.68645 1.03880 1.45787 1.00206 1.23796 0.97119 0.97862 0.94725 1.23445 0.96707 1.01496 0.97937 1.23784 0.93496 1.00732 0.91930 0.92825 0.94265 0.92477 0.96483 0.95696 0.93237 0.92435 0.90623 0.89955 0.92185 0.89421 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.09 37.16 0.34 -2.28 15 2 C 0.05 1.09 1.98 -67.71 -0.13 0.96 15 3 H 0.03 0.70 7.63 -51.93 -0.40 0.31 15 4 C 0.03 0.86 4.65 -27.88 -0.13 0.73 15 5 C -0.52 -14.53 8.18 -34.44 -0.28 -14.81 15 6 H 0.06 1.69 4.67 -52.49 -0.25 1.45 15 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 8 N -0.90 -27.46 13.29 55.43 0.74 -26.72 15 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 15 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 15 13 N -0.46 -9.46 5.98 -229.53 -1.37 -10.84 15 14 C -0.01 -0.09 6.71 -2.77 -0.02 -0.11 15 15 C -0.16 -2.42 8.28 -25.79 -0.21 -2.63 15 16 C 0.03 0.57 5.49 -2.58 -0.01 0.55 15 17 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 18 H 0.04 0.62 7.02 -51.93 -0.36 0.26 15 19 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 20 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 21 H 0.02 0.72 8.14 -51.93 -0.42 0.30 15 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 23 H 0.06 0.88 7.66 -51.93 -0.40 0.49 15 24 H 0.08 1.13 8.14 -51.93 -0.42 0.70 15 25 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 15 27 H 0.09 1.82 7.88 -51.93 -0.41 1.41 15 28 H 0.07 1.32 6.72 -51.93 -0.35 0.97 15 LS Contribution 226.86 15.07 3.42 3.42 Total: -1.00 -30.29 226.86 -7.05 -37.33 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -4.26 Total: -3.96 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -0.55 Total: -16.08 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.64 Total: -37.56 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -30.29 -7.05 -37.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260933637.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.122 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds