Wall clock time and date at job start Mon Mar 30 2020 02:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.50072 * 2 1 4 4 C 1.53038 * 109.53475 * 239.89946 * 2 1 3 5 5 N 1.46844 * 109.52243 * 180.86259 * 4 2 1 6 6 C 1.46840 * 111.19909 * 61.74445 * 5 4 2 7 7 C 1.53039 * 109.52434 * 298.25408 * 6 5 4 8 8 C 1.53120 * 109.27743 * 59.18034 * 7 6 5 9 9 H 1.09005 * 109.57688 * 62.28216 * 8 7 6 10 10 C 1.50701 * 109.52729 * 182.44032 * 8 7 6 11 11 H 1.08002 * 119.99761 * 119.67875 * 10 8 7 12 12 C 1.37871 * 119.99694 * 299.96437 * 10 8 7 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 8 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 8 15 15 H 1.48504 * 109.47209 * 89.99886 * 14 12 10 16 16 H 1.48501 * 109.47358 * 209.99377 * 14 12 10 17 17 H 1.48496 * 109.47341 * 329.99989 * 14 12 10 18 18 H 1.09004 * 109.46801 * 299.92206 * 1 2 3 19 19 H 1.08995 * 109.47199 * 59.91806 * 1 2 3 20 20 H 1.08993 * 109.47252 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46211 * 300.87844 * 4 2 1 22 22 H 1.08995 * 109.46076 * 60.85555 * 4 2 1 23 23 H 1.00894 * 110.99876 * 297.64110 * 5 4 2 24 24 H 1.08992 * 109.46810 * 58.27083 * 6 5 4 25 25 H 1.09003 * 109.46101 * 178.25530 * 6 5 4 26 26 H 1.09002 * 109.50190 * 299.24271 * 7 6 5 27 27 H 1.08995 * 109.50480 * 179.11847 * 7 6 5 28 28 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0418 -0.7233 -1.2478 5 7 3.5101 -0.7412 -1.2371 6 6 4.0237 -1.4717 -0.0715 7 6 3.5713 -0.7707 1.2115 8 6 2.0413 -0.7234 1.2490 9 1 1.6448 -1.7386 1.2699 10 6 1.5903 0.0186 2.4808 11 1 0.9983 0.9167 2.3837 12 6 1.9386 -0.4457 3.7313 13 7 2.6595 -1.5393 3.8496 14 14 1.3862 0.4784 5.2579 15 1 0.0694 -0.0440 5.7034 16 1 2.3855 0.2890 6.3399 17 1 1.2644 1.9247 4.9441 18 1 -0.3633 0.5126 0.8907 19 1 -0.3633 0.5151 -0.8892 20 1 -0.3633 -1.0276 -0.0005 21 1 1.6661 -1.7466 -1.2541 22 1 1.6915 -0.2024 -2.1388 23 1 3.8833 0.1955 -1.2701 24 1 3.6389 -2.4913 -0.0832 25 1 5.1129 -1.4941 -0.1080 26 1 3.9673 0.2446 1.2305 27 1 3.9396 -1.3219 2.0767 28 1 2.9048 -1.8657 4.7294 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260945986.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:24 Heat of formation + Delta-G solvation = -41.624209 kcal Electronic energy + Delta-G solvation = -10229.321561 eV Core-core repulsion = 8471.242442 eV Total energy + Delta-G solvation = -1758.079119 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.75804 -35.14929 -33.66227 -31.63180 -27.83114 -26.56115 -23.62829 -22.32620 -20.74991 -18.48609 -16.87523 -16.29077 -15.63683 -15.08824 -14.66264 -14.37380 -13.81958 -13.34026 -12.96679 -12.72166 -12.66812 -12.46317 -12.35866 -12.05954 -11.67222 -11.34782 -11.11186 -10.60119 -10.46151 -9.14264 -8.06331 -6.21690 1.37687 1.38842 1.48317 2.41331 3.17483 3.57416 4.10130 4.32002 4.39181 4.56147 4.69404 4.77299 4.85461 4.95293 5.07202 5.12222 5.33949 5.40202 5.48030 5.49744 5.65295 5.97363 6.00876 6.27925 6.39105 6.60232 6.90135 7.45795 8.95303 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.060474 B = 0.016848 C = 0.014083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.894801 B = 1661.515483 C = 1987.739677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.117 4.117 3 H 0.050 0.950 4 C 0.067 3.933 5 N -0.683 5.683 6 C 0.064 3.936 7 C -0.138 4.138 8 C 0.052 3.948 9 H -0.011 1.011 10 C -0.524 4.524 11 H 0.051 0.949 12 C 0.010 3.990 13 N -0.919 5.919 14 Si 0.949 3.051 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.269 1.269 18 H 0.040 0.960 19 H 0.066 0.934 20 H 0.041 0.959 21 H 0.057 0.943 22 H 0.089 0.911 23 H 0.341 0.659 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.027 0.973 27 H 0.059 0.941 28 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.547 2.601 -6.554 7.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.137 4.137 3 H 0.068 0.932 4 C -0.062 4.062 5 N -0.310 5.310 6 C -0.066 4.066 7 C -0.178 4.178 8 C 0.033 3.967 9 H 0.007 0.993 10 C -0.563 4.563 11 H 0.069 0.931 12 C -0.189 4.189 13 N -0.559 5.559 14 Si 0.775 3.225 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.194 1.194 18 H 0.059 0.941 19 H 0.085 0.915 20 H 0.060 0.940 21 H 0.076 0.924 22 H 0.107 0.893 23 H 0.158 0.842 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.410 1.932 -6.863 7.142 hybrid contribution -0.401 0.854 2.058 2.264 sum -0.811 2.786 -4.805 5.613 Atomic orbital electron populations 1.21584 0.95075 1.00814 1.00894 1.21832 0.96653 0.98740 0.96474 0.93195 1.22063 0.87550 1.00041 0.96572 1.60841 1.07793 1.21350 1.41032 1.21953 0.99169 0.97126 0.88366 1.22119 0.98969 0.98294 0.98407 1.18667 0.92072 0.93795 0.92139 0.99311 1.21574 1.32290 1.10371 0.92017 0.93050 1.25735 0.95384 0.95878 1.01855 1.70022 1.38768 1.23318 1.23758 0.85689 0.77992 0.79223 0.79552 1.20283 1.21006 1.19408 0.94052 0.91503 0.93994 0.92438 0.89282 0.84187 0.92902 0.90699 0.95450 0.92214 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 8.98 71.98 0.65 -3.98 15 2 C -0.12 -4.69 2.32 -10.74 -0.02 -4.72 15 3 H 0.05 2.03 8.14 -2.39 -0.02 2.01 15 4 C 0.07 2.30 5.84 86.33 0.50 2.80 15 5 N -0.68 -23.29 6.87 -514.03 -3.53 -26.82 15 6 C 0.06 2.47 6.55 86.33 0.57 3.03 15 7 C -0.14 -6.58 5.10 30.65 0.16 -6.42 15 8 C 0.05 2.59 1.67 -11.46 -0.02 2.58 15 9 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 15 10 C -0.52 -28.97 7.85 25.60 0.20 -28.77 15 11 H 0.05 2.80 6.89 -2.91 -0.02 2.78 15 12 C 0.01 0.53 5.30 84.65 0.45 0.98 15 13 N -0.92 -53.81 11.36 21.45 0.24 -53.56 15 14 Si 0.95 44.16 29.54 68.60 2.03 46.19 15 15 H -0.28 -12.61 7.11 99.48 0.71 -11.91 15 16 H -0.28 -13.02 7.11 99.48 0.71 -12.31 15 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 18 H 0.04 1.65 6.79 -2.39 -0.02 1.64 15 19 H 0.07 1.97 8.14 -2.39 -0.02 1.95 15 20 H 0.04 1.54 8.14 -2.39 -0.02 1.52 15 21 H 0.06 2.04 8.14 -2.39 -0.02 2.03 15 22 H 0.09 2.52 8.14 -2.39 -0.02 2.50 15 23 H 0.34 10.69 8.86 -89.70 -0.79 9.89 15 24 H 0.05 2.14 8.14 -2.39 -0.02 2.12 15 25 H 0.07 2.60 8.14 -2.39 -0.02 2.58 15 26 H 0.03 1.29 8.14 -2.39 -0.02 1.27 15 27 H 0.06 3.24 6.16 -2.39 -0.01 3.23 15 28 H 0.26 14.47 8.31 -92.71 -0.77 13.70 15 Total: -1.00 -59.36 222.99 1.55 -57.81 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.33 Total: 10.88 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 2.48 Total: -34.49 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -3.29 Total: -80.38 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -59.36 1.55 -57.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260945986.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.188 kcal (2) G-P(sol) polarization free energy of solvation -59.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds