Wall clock time and date at job start Mon Mar 30 2020 02:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.53864 * 2 1 4 4 C 1.53037 * 109.50001 * 120.10079 * 2 1 3 5 5 N 1.46847 * 109.52490 * 60.76521 * 4 2 1 6 6 C 1.46842 * 111.20141 * 61.73569 * 5 4 2 7 7 C 1.53038 * 109.52658 * 298.26127 * 6 5 4 8 8 C 1.53120 * 109.50342 * 239.90488 * 2 1 3 9 9 H 1.09000 * 109.52534 * 177.74564 * 8 2 1 10 10 C 1.50694 * 109.52468 * 57.61907 * 8 2 1 11 11 H 1.08002 * 120.00179 * 359.97438 * 10 8 2 12 12 C 1.37879 * 120.00472 * 180.02562 * 10 8 2 13 13 N 1.31514 * 119.99350 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00608 * 179.97438 * 12 10 8 15 15 H 1.48490 * 109.47339 * 179.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 300.00306 * 14 12 10 17 17 H 1.48504 * 109.46636 * 59.99865 * 14 12 10 18 18 H 1.08995 * 109.46929 * 180.09327 * 1 2 3 19 19 H 1.08995 * 109.46851 * 300.09810 * 1 2 3 20 20 H 1.08998 * 109.46772 * 60.09501 * 1 2 3 21 21 H 1.09004 * 109.45719 * 180.77284 * 4 2 1 22 22 H 1.08999 * 109.46342 * 300.75169 * 4 2 1 23 23 H 1.00899 * 111.00213 * 185.84396 * 5 4 2 24 24 H 1.09001 * 109.46121 * 58.27569 * 6 5 4 25 25 H 1.09003 * 109.46504 * 178.25653 * 6 5 4 26 26 H 1.09002 * 109.50333 * 299.23968 * 7 6 5 27 27 H 1.08996 * 109.50540 * 179.12015 * 7 6 5 28 28 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0409 -0.7235 1.2480 5 7 1.5675 -2.1135 1.2378 6 6 2.0845 -2.8420 0.0723 7 6 1.5749 -2.1818 -1.2108 8 6 2.0412 -0.7237 -1.2488 9 1 3.1305 -0.6891 -1.2696 10 6 1.4924 -0.0514 -2.4807 11 1 0.8433 0.8064 -2.3839 12 6 1.8180 -0.5318 -3.7314 13 7 2.6081 -1.5766 -3.8492 14 14 1.1371 0.3012 -5.2584 15 1 1.6337 -0.4015 -6.4686 16 1 -0.3467 0.2507 -5.2299 17 1 1.5836 1.7172 -5.2905 18 1 -0.3633 -1.0276 0.0017 19 1 -0.3633 0.5153 0.8891 20 1 -0.3633 0.5124 -0.8908 21 1 3.1308 -0.7111 1.2543 22 1 1.6668 -0.2191 2.1389 23 1 1.8111 -2.5848 2.0961 24 1 3.1742 -2.8196 0.0842 25 1 1.7420 -3.8762 0.1091 26 1 0.4856 -2.2160 -1.2299 27 1 1.9715 -2.7133 -2.0759 28 1 2.8369 -1.9148 -4.7291 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260945987.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:25 Heat of formation + Delta-G solvation = -34.936732 kcal Electronic energy + Delta-G solvation = -10297.437193 eV Core-core repulsion = 8539.648065 eV Total energy + Delta-G solvation = -1757.789128 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.74670 -35.16969 -33.33942 -31.61377 -27.94645 -26.77184 -23.54752 -22.99677 -19.32031 -18.32110 -17.42435 -16.47201 -15.28350 -15.06597 -14.86686 -14.42715 -14.13471 -13.42994 -12.84378 -12.77133 -12.43919 -12.30590 -12.17657 -12.05693 -11.70098 -11.15960 -10.68349 -10.52672 -10.31972 -9.23063 -8.05272 -6.17188 1.41539 1.42727 1.50129 2.45074 3.21368 3.48443 4.23923 4.32092 4.42468 4.54638 4.65488 4.88251 4.92727 5.01155 5.06365 5.20178 5.40273 5.44289 5.57004 5.65223 5.73123 6.03602 6.07009 6.32096 6.44793 6.73536 6.94147 7.49619 8.99340 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.069529 B = 0.016411 C = 0.014438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.611579 B = 1705.787116 C = 1938.862900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 H 0.050 0.950 4 C 0.069 3.931 5 N -0.683 5.683 6 C 0.065 3.935 7 C -0.099 4.099 8 C 0.049 3.951 9 H -0.019 1.019 10 C -0.523 4.523 11 H 0.054 0.946 12 C 0.009 3.991 13 N -0.921 5.921 14 Si 0.951 3.049 15 H -0.285 1.285 16 H -0.272 1.272 17 H -0.273 1.273 18 H 0.051 0.949 19 H 0.053 0.947 20 H 0.034 0.966 21 H 0.015 0.985 22 H 0.089 0.911 23 H 0.347 0.653 24 H 0.010 0.990 25 H 0.075 0.925 26 H 0.036 0.964 27 H 0.056 0.944 28 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.001 0.056 7.473 7.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.105 4.105 3 H 0.069 0.931 4 C -0.060 4.060 5 N -0.315 5.315 6 C -0.064 4.064 7 C -0.137 4.137 8 C 0.030 3.970 9 H -0.001 1.001 10 C -0.561 4.561 11 H 0.073 0.927 12 C -0.189 4.189 13 N -0.561 5.561 14 Si 0.776 3.224 15 H -0.211 1.211 16 H -0.197 1.197 17 H -0.198 1.198 18 H 0.070 0.930 19 H 0.072 0.928 20 H 0.053 0.947 21 H 0.034 0.966 22 H 0.107 0.893 23 H 0.166 0.834 24 H 0.029 0.971 25 H 0.093 0.907 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.513 0.101 7.038 7.473 hybrid contribution 0.925 0.174 -0.941 1.331 sum -1.588 0.275 6.097 6.306 Atomic orbital electron populations 1.21504 0.94695 1.01302 0.99538 1.21184 0.96986 0.97629 0.94693 0.93139 1.21921 0.96020 0.89601 0.98434 1.60225 1.63507 1.02707 1.05061 1.21910 0.95573 0.97307 0.91604 1.21461 0.98561 0.98213 0.95483 1.18663 0.93073 0.92879 0.92346 1.00101 1.21565 1.29086 1.13605 0.91863 0.92743 1.25750 0.95549 0.95742 1.01870 1.70026 1.37200 1.25089 1.23781 0.85726 0.78872 0.78710 0.79045 1.21096 1.19690 1.19795 0.92951 0.92787 0.94651 0.96646 0.89259 0.83431 0.97131 0.90690 0.94545 0.92532 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.47 8.46 71.98 0.61 -3.86 15 2 C -0.09 -3.62 2.73 -10.74 -0.03 -3.65 15 3 H 0.05 2.11 8.14 -2.39 -0.02 2.10 15 4 C 0.07 2.41 5.99 86.33 0.52 2.92 15 5 N -0.68 -22.96 6.13 -514.01 -3.15 -26.11 15 6 C 0.07 2.55 6.55 86.33 0.57 3.12 15 7 C -0.10 -4.83 4.77 30.65 0.15 -4.68 15 8 C 0.05 2.52 1.95 -11.46 -0.02 2.50 15 9 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 15 10 C -0.52 -29.35 7.83 25.60 0.20 -29.15 15 11 H 0.05 3.00 6.55 -2.91 -0.02 2.98 15 12 C 0.01 0.49 5.31 84.66 0.45 0.94 15 13 N -0.92 -54.43 11.37 21.45 0.24 -54.18 15 14 Si 0.95 44.53 29.54 68.60 2.03 46.56 15 15 H -0.29 -13.13 7.11 99.48 0.71 -12.43 15 16 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15 17 H -0.27 -12.43 7.11 99.48 0.71 -11.72 15 18 H 0.05 2.14 6.01 -2.39 -0.01 2.13 15 19 H 0.05 1.78 8.14 -2.39 -0.02 1.76 15 20 H 0.03 1.49 6.48 -2.39 -0.02 1.47 15 21 H 0.02 0.54 8.14 -2.38 -0.02 0.52 15 22 H 0.09 2.55 8.14 -2.39 -0.02 2.53 15 23 H 0.35 9.23 8.90 -89.69 -0.80 8.43 15 24 H 0.01 0.42 8.14 -2.39 -0.02 0.40 15 25 H 0.07 2.60 8.14 -2.39 -0.02 2.58 15 26 H 0.04 1.81 6.58 -2.39 -0.02 1.79 15 27 H 0.06 3.12 6.17 -2.39 -0.01 3.11 15 28 H 0.26 14.59 8.31 -92.70 -0.77 13.82 15 Total: -1.00 -60.80 217.95 1.89 -58.91 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 0.34 Total: 6.68 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 2.44 Total: -31.86 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -2.90 Total: -80.29 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -60.80 1.89 -58.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260945987.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.974 kcal (2) G-P(sol) polarization free energy of solvation -60.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds