Wall clock time and date at job start Mon Mar 30 2020 02:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.50416 * 2 1 4 4 C 1.53033 * 109.53554 * 120.09886 * 2 1 3 5 5 N 1.46850 * 109.52490 * 179.13844 * 4 2 1 6 6 C 1.46845 * 111.19654 * 298.25970 * 5 4 2 7 7 C 1.53034 * 109.52676 * 61.74248 * 6 5 4 8 8 C 1.53119 * 109.50200 * 239.92026 * 2 1 3 9 9 H 1.09000 * 109.57842 * 302.30046 * 8 2 1 10 10 C 1.50703 * 109.52158 * 62.46269 * 8 2 1 11 11 H 1.07996 * 120.00066 * 359.67915 * 10 8 2 12 12 C 1.37880 * 119.99627 * 179.68295 * 10 8 2 13 13 N 1.31515 * 120.00533 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99804 * 179.97438 * 12 10 8 15 15 H 1.48507 * 109.47214 * 59.99506 * 14 12 10 16 16 H 1.48496 * 109.47439 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46915 * 299.99927 * 14 12 10 18 18 H 1.09000 * 109.46879 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.47098 * 300.08000 * 1 2 3 20 20 H 1.09002 * 109.46767 * 60.07777 * 1 2 3 21 21 H 1.09005 * 109.46370 * 299.15526 * 4 2 1 22 22 H 1.08998 * 109.46299 * 59.12420 * 4 2 1 23 23 H 1.00905 * 111.00106 * 174.15673 * 5 4 2 24 24 H 1.08995 * 109.46315 * 301.72098 * 6 5 4 25 25 H 1.09005 * 109.45975 * 181.75612 * 6 5 4 26 26 H 1.08997 * 109.50792 * 180.88024 * 7 6 5 27 27 H 1.09006 * 109.50471 * 60.75677 * 7 6 5 28 28 H 0.96999 * 120.00250 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0418 -0.7233 1.2478 5 7 3.5101 -0.7412 1.2371 6 6 4.0238 -1.4716 0.0714 7 6 3.5713 -0.7707 -1.2115 8 6 2.0412 -0.7234 -1.2490 9 1 1.6459 -1.7390 -1.2704 10 6 1.5903 0.0187 -2.4807 11 1 0.9939 0.9138 -2.3838 12 6 1.9392 -0.4453 -3.7313 13 7 2.6659 -1.5351 -3.8494 14 14 1.3797 0.4740 -5.2582 15 1 1.9159 1.8586 -5.2266 16 1 1.8831 -0.2237 -6.4685 17 1 -0.1042 0.5186 -5.2931 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5151 0.8892 20 1 -0.3633 0.5126 -0.8907 21 1 1.6913 -0.2024 2.1389 22 1 1.6662 -1.7465 1.2541 23 1 3.8733 -1.1283 2.0953 24 1 3.6389 -2.4913 0.0833 25 1 5.1130 -1.4942 0.1081 26 1 3.9396 -1.3219 -2.0767 27 1 3.9673 0.2447 -1.2306 28 1 2.9116 -1.8613 -4.7292 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260945992.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:27 Heat of formation + Delta-G solvation = -39.161405 kcal Electronic energy + Delta-G solvation = -10209.943388 eV Core-core repulsion = 8451.971064 eV Total energy + Delta-G solvation = -1757.972324 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.56629 -35.20052 -33.71579 -31.73662 -27.85057 -26.70862 -23.58840 -22.32652 -20.22721 -18.45763 -17.12614 -16.46420 -15.57136 -14.87526 -14.73555 -14.51670 -14.10516 -13.35702 -12.81624 -12.73485 -12.65915 -12.48228 -12.26029 -12.03611 -11.60729 -11.37262 -10.68983 -10.54543 -10.34597 -9.29643 -8.05502 -6.17717 1.41384 1.42713 1.50056 2.44827 3.20811 3.45465 4.21660 4.25843 4.38696 4.52893 4.68524 4.80337 4.90569 4.95005 4.98197 5.12665 5.36075 5.42598 5.50389 5.57918 5.69733 5.99925 6.06374 6.28664 6.43818 6.71066 6.93499 7.49074 8.98941 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.060822 B = 0.016765 C = 0.013987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.250849 B = 1669.769970 C = 2001.368850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.083 4.083 3 H 0.050 0.950 4 C 0.070 3.930 5 N -0.692 5.692 6 C 0.066 3.934 7 C -0.103 4.103 8 C 0.051 3.949 9 H -0.013 1.013 10 C -0.524 4.524 11 H 0.053 0.947 12 C 0.009 3.991 13 N -0.921 5.921 14 Si 0.951 3.049 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.271 1.271 18 H 0.041 0.959 19 H 0.066 0.934 20 H 0.045 0.955 21 H 0.089 0.911 22 H 0.019 0.981 23 H 0.348 0.652 24 H 0.013 0.987 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.027 0.973 28 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.668 1.056 7.434 7.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.102 4.102 3 H 0.069 0.931 4 C -0.060 4.060 5 N -0.323 5.323 6 C -0.063 4.063 7 C -0.141 4.141 8 C 0.032 3.968 9 H 0.005 0.995 10 C -0.562 4.562 11 H 0.071 0.929 12 C -0.189 4.189 13 N -0.561 5.561 14 Si 0.777 3.223 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.197 1.197 18 H 0.060 0.940 19 H 0.085 0.915 20 H 0.064 0.936 21 H 0.107 0.893 22 H 0.037 0.963 23 H 0.167 0.833 24 H 0.032 0.968 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.536 1.551 7.001 7.190 hybrid contribution -0.327 -0.702 -0.943 1.220 sum -0.863 0.849 6.058 6.178 Atomic orbital electron populations 1.21615 0.94910 1.00810 1.01121 1.21157 0.95587 0.98798 0.94641 0.93125 1.21962 0.87455 0.98076 0.98471 1.60243 1.08498 1.58392 1.05216 1.21904 0.99014 0.93983 0.91425 1.21492 0.98701 0.98162 0.95787 1.18683 0.92211 0.93582 0.92290 0.99537 1.21547 1.32156 1.10538 0.91927 0.92885 1.25746 0.95405 0.95862 1.01866 1.70011 1.38688 1.23551 1.23815 0.85725 0.78759 0.78824 0.79029 1.19824 1.21057 1.19658 0.94022 0.91480 0.93629 0.89280 0.96291 0.83331 0.96828 0.90680 0.92066 0.95459 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 8.98 71.98 0.65 -4.11 15 2 C -0.08 -3.50 2.34 -10.74 -0.03 -3.52 15 3 H 0.05 2.24 8.14 -2.39 -0.02 2.23 15 4 C 0.07 2.43 5.83 86.32 0.50 2.93 15 5 N -0.69 -23.96 6.85 -514.01 -3.52 -27.48 15 6 C 0.07 2.62 6.55 86.33 0.57 3.18 15 7 C -0.10 -5.12 5.12 30.65 0.16 -4.96 15 8 C 0.05 2.62 1.68 -11.46 -0.02 2.60 15 9 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 15 10 C -0.52 -29.42 7.86 25.60 0.20 -29.21 15 11 H 0.05 2.93 6.88 -2.91 -0.02 2.91 15 12 C 0.01 0.51 5.30 84.66 0.45 0.96 15 13 N -0.92 -54.35 11.35 21.45 0.24 -54.11 15 14 Si 0.95 44.51 29.54 68.60 2.03 46.54 15 15 H -0.27 -12.48 7.11 99.48 0.71 -11.77 15 16 H -0.29 -13.10 7.11 99.48 0.71 -12.39 15 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 18 H 0.04 1.54 8.14 -2.39 -0.02 1.52 15 19 H 0.07 2.02 8.14 -2.39 -0.02 2.00 15 20 H 0.04 1.85 6.78 -2.39 -0.02 1.83 15 21 H 0.09 2.57 8.14 -2.38 -0.02 2.55 15 22 H 0.02 0.67 8.14 -2.39 -0.02 0.65 15 23 H 0.35 9.51 8.90 -89.69 -0.80 8.71 15 24 H 0.01 0.55 8.14 -2.39 -0.02 0.53 15 25 H 0.07 2.65 8.14 -2.38 -0.02 2.63 15 26 H 0.06 3.40 6.15 -2.39 -0.01 3.39 15 27 H 0.03 1.38 8.14 -2.38 -0.02 1.37 15 28 H 0.26 14.59 8.31 -92.71 -0.77 13.82 15 Total: -1.00 -61.18 223.00 1.56 -59.63 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.33 Total: 7.56 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: 2.48 Total: -32.13 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -3.28 Total: -81.58 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -61.18 1.56 -59.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260945992.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.465 kcal (2) G-P(sol) polarization free energy of solvation -61.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds