Wall clock time and date at job start Mon Mar 30 2020 02:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47557 * 2 1 4 4 H 1.08002 * 120.00027 * 239.90575 * 3 2 1 5 5 C 1.37881 * 119.99707 * 59.89501 * 3 2 1 6 6 N 1.31509 * 119.99961 * 0.02562 * 5 3 2 7 7 Si 1.86795 * 119.99926 * 180.02562 * 5 3 2 8 8 H 1.48500 * 109.47200 * 90.00294 * 7 5 3 9 9 H 1.48502 * 109.47574 * 210.00646 * 7 5 3 10 10 H 1.48504 * 109.47165 * 330.00885 * 7 5 3 11 11 C 1.53000 * 109.47102 * 120.00001 * 2 1 3 12 12 N 1.46906 * 109.47290 * 179.97438 * 11 2 1 13 13 C 1.53003 * 109.47099 * 239.99831 * 2 1 3 14 14 C 1.52996 * 117.49983 * 13.92085 * 13 2 1 15 15 C 1.52997 * 117.49907 * 305.26033 * 13 2 1 16 16 H 1.09003 * 109.46913 * 60.00428 * 1 2 3 17 17 H 1.08991 * 109.47005 * 300.00118 * 1 2 3 18 18 H 1.09002 * 109.47051 * 179.97438 * 1 2 3 19 19 H 0.97004 * 119.99741 * 179.97438 * 6 5 3 20 20 H 1.09003 * 109.47454 * 299.99794 * 11 2 1 21 21 H 1.09005 * 109.47431 * 60.00248 * 11 2 1 22 22 H 1.00896 * 111.00356 * 179.97438 * 12 11 2 23 23 H 1.00902 * 111.00012 * 303.95918 * 12 11 2 24 24 H 1.09002 * 115.54961 * 159.58986 * 13 2 1 25 25 H 1.08997 * 117.49827 * 359.97438 * 14 13 2 26 26 H 1.08998 * 117.49845 * 145.01784 * 14 13 2 27 27 H 1.09006 * 117.49861 * 214.98067 * 15 13 2 28 28 H 1.08997 * 117.50093 * 0.02562 * 15 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 1 2.6546 1.7735 -0.8092 5 6 1.6976 2.2704 1.0330 6 7 0.9402 1.8407 2.0185 7 14 2.3197 4.0317 1.0327 8 1 1.3423 4.9018 0.3307 9 1 2.4828 4.4994 2.4327 10 1 3.6288 4.0941 0.3344 11 6 2.0400 -0.7213 1.2492 12 7 3.5091 -0.7218 1.2490 13 6 2.0400 -0.7213 -1.2492 14 6 1.0336 -0.9911 -2.3696 15 6 1.5368 -2.1446 -1.4981 16 1 -0.3633 0.5138 -0.8901 17 1 -0.3633 0.5138 0.8899 18 1 -0.3633 -1.0277 -0.0005 19 1 0.7049 2.4383 2.7455 20 1 1.6767 -0.2074 2.1393 21 1 1.6767 -1.7490 1.2493 22 1 3.8707 -1.1924 2.0649 23 1 3.8703 -1.1356 0.4026 24 1 3.0657 -0.4923 -1.5385 25 1 0.0080 -0.6552 -2.2165 26 1 1.3972 -0.9400 -3.3958 27 1 2.2314 -2.8519 -1.9515 28 1 0.8422 -2.5670 -0.7721 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260948828.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:07 Heat of formation + Delta-G solvation = 3.134216 kcal Electronic energy + Delta-G solvation = -10307.575552 eV Core-core repulsion = 8551.437304 eV Total energy + Delta-G solvation = -1756.138248 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.58431 -35.56712 -33.78534 -31.16637 -27.24353 -25.41048 -23.71888 -22.88256 -19.56388 -17.91850 -16.95950 -16.51777 -15.83467 -15.17579 -14.91761 -14.00809 -13.75009 -13.03246 -12.86522 -12.62857 -12.46163 -12.19500 -12.10084 -11.68996 -11.38747 -10.88589 -10.67309 -10.31439 -10.23924 -9.01627 -7.86777 -5.95968 1.44777 1.47356 1.55637 2.55000 3.20000 3.40224 4.13749 4.20837 4.37770 4.40525 4.68549 4.84475 4.95773 4.96102 5.07954 5.18995 5.35904 5.43369 5.52367 5.69304 5.79385 6.03010 6.32571 6.53665 6.83198 7.01162 7.10098 7.67833 9.13003 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.054312 B = 0.018216 C = 0.016942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.411677 B = 1536.760799 C = 1652.317877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.090 3.910 3 C -0.478 4.478 4 H 0.037 0.963 5 C 0.023 3.977 6 N -0.912 5.912 7 Si 0.939 3.061 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.277 1.277 11 C 0.089 3.911 12 N -0.837 5.837 13 C -0.138 4.138 14 C -0.185 4.185 15 C -0.178 4.178 16 H 0.029 0.971 17 H 0.056 0.944 18 H 0.024 0.976 19 H 0.252 0.748 20 H 0.066 0.934 21 H -0.014 1.014 22 H 0.328 0.672 23 H 0.331 0.669 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.211 -5.572 -4.069 7.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.089 3.911 3 C -0.516 4.516 4 H 0.056 0.944 5 C -0.174 4.174 6 N -0.553 5.553 7 Si 0.768 3.232 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.203 1.203 11 C -0.042 4.042 12 N -0.365 5.365 13 C -0.157 4.157 14 C -0.222 4.222 15 C -0.215 4.215 16 H 0.048 0.952 17 H 0.075 0.925 18 H 0.043 0.957 19 H 0.062 0.938 20 H 0.084 0.916 21 H 0.004 0.996 22 H 0.139 0.861 23 H 0.144 0.856 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.068 -4.700 -3.878 6.186 hybrid contribution 0.145 0.078 0.207 0.265 sum 1.214 -4.621 -3.671 6.025 Atomic orbital electron populations 1.21778 0.98356 0.97421 1.00835 1.17720 0.91458 0.92834 0.89062 1.21076 1.28950 0.96068 1.05548 0.94441 1.25364 0.95669 1.00876 0.95533 1.69890 1.38623 1.35690 1.11142 0.85859 0.78506 0.82300 0.76585 1.20912 1.21638 1.20258 1.21657 0.86928 0.93758 1.01815 1.58502 1.08744 1.63129 1.06138 1.22398 0.97798 0.97222 0.98236 1.23047 0.99880 1.03410 0.95835 1.22923 1.04059 0.91404 1.03115 0.95174 0.92531 0.95687 0.93808 0.91611 0.99561 0.86110 0.85635 0.89752 0.89377 0.88447 0.87881 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.96 6.91 71.98 0.50 -5.46 15 2 C 0.09 4.27 0.43 -52.93 -0.02 4.25 15 3 C -0.48 -25.96 7.61 25.60 0.19 -25.77 15 4 H 0.04 2.08 7.74 -2.91 -0.02 2.06 15 5 C 0.02 1.25 5.15 84.66 0.44 1.69 15 6 N -0.91 -51.61 9.35 21.45 0.20 -51.41 15 7 Si 0.94 45.06 29.54 68.60 2.03 47.08 15 8 H -0.28 -13.30 7.11 99.48 0.71 -12.59 15 9 H -0.29 -13.85 7.11 99.48 0.71 -13.14 15 10 H -0.28 -13.23 7.11 99.48 0.71 -12.52 15 11 C 0.09 4.16 5.42 86.30 0.47 4.63 15 12 N -0.84 -34.99 9.19 -186.70 -1.71 -36.70 15 13 C -0.14 -5.55 3.99 -10.79 -0.04 -5.59 15 14 C -0.18 -6.42 9.66 30.62 0.30 -6.12 15 15 C -0.18 -5.85 9.45 30.62 0.29 -5.56 15 16 H 0.03 1.38 6.73 -2.39 -0.02 1.37 15 17 H 0.06 3.00 6.06 -2.39 -0.01 2.98 15 18 H 0.02 1.05 6.95 -2.39 -0.02 1.03 15 19 H 0.25 13.91 8.31 -92.71 -0.77 13.14 15 20 H 0.07 3.54 6.08 -2.39 -0.01 3.53 15 21 H -0.01 -0.59 7.66 -2.38 -0.02 -0.61 15 22 H 0.33 11.94 9.08 -89.70 -0.81 11.12 15 23 H 0.33 12.58 7.67 -89.69 -0.69 11.89 15 24 H 0.08 3.44 7.82 -2.39 -0.02 3.42 15 25 H 0.09 3.20 5.89 -2.39 -0.01 3.18 15 26 H 0.10 2.94 8.14 -2.39 -0.02 2.92 15 27 H 0.10 2.84 8.14 -2.38 -0.02 2.82 15 28 H 0.08 2.75 7.08 -2.39 -0.02 2.73 15 Total: -1.00 -57.93 221.36 2.28 -55.64 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -0.34 Total: 23.33 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 2.12 Total: -37.94 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -1.51 Total: -88.11 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -57.93 2.28 -55.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260948828.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.778 kcal (2) G-P(sol) polarization free energy of solvation -57.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds