Wall clock time and date at job start Mon Mar 30 2020 02:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50704 * 109.46850 * 2 1 4 4 H 1.08005 * 120.00140 * 357.72546 * 3 2 1 5 5 C 1.37877 * 119.99756 * 177.72283 * 3 2 1 6 6 N 1.31512 * 119.99681 * 178.73039 * 5 3 2 7 7 Si 1.86793 * 119.99947 * 358.72608 * 5 3 2 8 8 H 1.48507 * 109.46840 * 113.48875 * 7 5 3 9 9 H 1.48500 * 109.47431 * 233.48378 * 7 5 3 10 10 H 1.48495 * 109.47411 * 353.48711 * 7 5 3 11 11 C 1.52997 * 109.46857 * 240.00645 * 2 1 3 12 12 N 1.46906 * 109.46945 * 172.73570 * 11 2 1 13 13 C 1.52992 * 109.47140 * 120.00299 * 2 1 3 14 14 C 1.53005 * 117.51773 * 244.73648 * 13 2 1 15 15 C 1.52997 * 60.00343 * 107.48153 * 14 13 2 16 16 H 1.08999 * 109.46712 * 299.99502 * 1 2 3 17 17 H 1.08994 * 109.47118 * 59.99411 * 1 2 3 18 18 H 1.08999 * 109.46715 * 179.97438 * 1 2 3 19 19 H 0.97007 * 119.99793 * 179.97438 * 6 5 3 20 20 H 1.08997 * 109.47063 * 292.73133 * 11 2 1 21 21 H 1.09002 * 109.47593 * 52.73340 * 11 2 1 22 22 H 1.00897 * 110.99676 * 188.06215 * 12 11 2 23 23 H 1.00899 * 110.99676 * 312.00923 * 12 11 2 24 24 H 1.08998 * 115.55037 * 99.03865 * 13 2 1 25 25 H 1.08996 * 117.49916 * 214.97138 * 14 13 2 26 26 H 1.09002 * 117.49406 * 359.97438 * 14 13 2 27 27 H 1.08998 * 117.50308 * 252.51821 * 15 14 13 28 28 H 1.08996 * 117.51699 * 107.47935 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 1 1.3312 2.2415 -0.0371 5 6 3.3870 1.6731 0.0474 6 7 3.8263 2.9125 0.0222 7 14 4.5982 0.2547 0.1476 8 1 5.3967 0.1963 -1.1031 9 1 5.5058 0.4594 1.3050 10 1 3.8553 -1.0194 0.3206 11 6 2.0400 -0.7211 -1.2493 12 7 3.4986 -0.5713 -1.3401 13 6 2.0401 -0.7213 1.2491 14 6 2.8217 0.1047 2.2728 15 6 1.3970 -0.3552 2.5884 16 1 -0.3633 0.5138 0.8900 17 1 -0.3633 0.5139 -0.8899 18 1 -0.3633 -1.0277 -0.0005 19 1 4.7794 3.0900 0.0560 20 1 1.7867 -1.7794 -1.1868 21 1 1.5744 -0.2878 -2.1345 22 1 3.8441 -0.9236 -2.2202 23 1 3.7725 0.3901 -1.2028 24 1 2.3424 -1.7582 1.1027 25 1 3.6382 -0.3888 2.7998 26 1 2.9731 1.1622 2.0561 27 1 0.6108 0.3997 2.5794 28 1 1.2759 -1.1514 3.3229 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260948829.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:08 Heat of formation + Delta-G solvation = 117.728342 kcal Electronic energy + Delta-G solvation = -10735.955141 eV Core-core repulsion = 8984.786068 eV Total energy + Delta-G solvation = -1751.169074 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.58431 -34.54509 -31.96572 -30.83464 -25.49295 -24.47899 -21.82543 -21.31605 -18.25426 -17.51291 -15.53012 -14.83494 -14.48351 -13.65739 -13.14095 -12.50850 -12.34643 -11.83305 -11.45185 -10.95497 -10.54464 -10.34549 -9.95124 -9.85401 -9.43597 -9.00452 -8.78877 -8.61111 -8.35838 -6.50028 -5.95898 -4.10107 3.61511 3.77135 4.08957 4.52816 4.97715 5.04126 5.48642 5.72363 6.00576 6.11716 6.17475 6.31949 6.40160 6.47363 6.54940 6.66352 6.77841 6.82964 6.99213 7.17385 7.33573 7.50811 7.59628 7.77457 7.89963 8.52526 8.94484 9.50523 11.03040 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.043136 B = 0.030292 C = 0.027389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.960522 B = 924.099470 C = 1022.076613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.056 3.944 3 C -0.517 4.517 4 H 0.069 0.931 5 C 0.017 3.983 6 N -0.901 5.901 7 Si 1.023 2.977 8 H -0.364 1.364 9 H -0.349 1.349 10 H -0.233 1.233 11 C 0.068 3.932 12 N -0.830 5.830 13 C -0.113 4.113 14 C -0.200 4.200 15 C -0.186 4.186 16 H 0.050 0.950 17 H 0.042 0.958 18 H 0.032 0.968 19 H 0.263 0.737 20 H 0.053 0.947 21 H 0.029 0.971 22 H 0.319 0.681 23 H 0.348 0.652 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.128 0.872 27 H 0.088 0.912 28 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.848 -7.311 0.159 7.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.055 3.945 3 C -0.555 4.555 4 H 0.088 0.912 5 C -0.182 4.182 6 N -0.537 5.537 7 Si 0.874 3.126 8 H -0.303 1.303 9 H -0.287 1.287 10 H -0.161 1.161 11 C -0.062 4.062 12 N -0.384 5.384 13 C -0.131 4.131 14 C -0.236 4.236 15 C -0.223 4.223 16 H 0.069 0.931 17 H 0.061 0.939 18 H 0.051 0.949 19 H 0.072 0.928 20 H 0.072 0.928 21 H 0.047 0.953 22 H 0.135 0.865 23 H 0.181 0.819 24 H 0.102 0.898 25 H 0.089 0.911 26 H 0.145 0.855 27 H 0.106 0.894 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.757 -7.563 0.784 8.088 hybrid contribution 0.575 0.092 -1.005 1.161 sum -2.182 -7.471 -0.221 7.787 Atomic orbital electron populations 1.21634 0.96415 0.98774 1.00753 1.18207 0.92338 0.94964 0.89017 1.20921 0.92590 0.90155 1.51819 0.91248 1.26044 0.99999 0.98075 0.94133 1.69984 1.14698 1.19804 1.49182 0.83127 0.75516 0.82875 0.71083 1.30284 1.28668 1.16079 1.21977 0.86671 0.98393 0.99111 1.61377 1.14748 1.26583 1.35708 1.22497 1.02309 0.97645 0.90693 1.23365 0.92994 1.03723 1.03532 1.22899 0.97092 1.02732 0.99562 0.93052 0.93925 0.94920 0.92782 0.92848 0.95258 0.86491 0.81886 0.89818 0.91115 0.85453 0.89350 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.07 37.16 0.30 -2.04 15 2 C 0.06 1.27 0.62 -155.66 -0.10 1.17 15 3 C -0.52 -14.15 7.58 -34.44 -0.26 -14.41 15 4 H 0.07 2.10 7.99 -52.48 -0.42 1.68 15 5 C 0.02 0.48 3.36 -17.82 -0.06 0.42 15 6 N -0.90 -27.48 13.96 55.43 0.77 -26.71 15 7 Si 1.02 26.29 17.99 -169.99 -3.06 23.23 15 8 H -0.36 -9.46 6.80 56.52 0.38 -9.07 15 9 H -0.35 -9.42 7.11 56.52 0.40 -9.01 15 10 H -0.23 -5.61 3.42 51.02 0.17 -5.43 15 11 C 0.07 1.43 5.62 -3.82 -0.02 1.41 15 12 N -0.83 -18.60 3.83 -10.37 -0.04 -18.64 15 13 C -0.11 -2.48 3.23 -90.62 -0.29 -2.77 15 14 C -0.20 -4.58 6.31 -26.73 -0.17 -4.75 15 15 C -0.19 -3.71 9.65 -26.73 -0.26 -3.97 15 16 H 0.05 1.01 6.60 -51.93 -0.34 0.67 15 17 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 18 H 0.03 0.56 8.14 -51.93 -0.42 0.14 15 19 H 0.26 7.64 8.31 -40.82 -0.34 7.30 15 20 H 0.05 1.01 8.11 -51.93 -0.42 0.59 15 21 H 0.03 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.32 6.19 9.07 -39.29 -0.36 5.84 15 23 H 0.35 8.73 2.39 -39.29 -0.09 8.63 15 24 H 0.08 1.78 7.33 -51.93 -0.38 1.40 15 25 H 0.07 1.53 7.84 -51.93 -0.41 1.12 15 26 H 0.13 3.36 4.93 -51.93 -0.26 3.11 15 27 H 0.09 1.77 6.79 -51.93 -0.35 1.42 15 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 LS Contribution 199.47 15.07 3.01 3.01 Total: -1.00 -30.03 199.47 -4.28 -34.30 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -4.10 Total: 9.74 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -0.86 Total: -24.93 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.73 Total: -45.35 kcal Atomic # 14 Polarization: 26.29 SS G_CDS: -3.06 Total: 23.23 kcal Total LS contribution 3.01 Total: 3.01 kcal Total: -30.03 -4.28 -34.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260948829.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.033 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds