Wall clock time and date at job start Mon Mar 30 2020 02:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50704 * 109.46850 * 2 1 4 4 H 1.08005 * 120.00140 * 357.72546 * 3 2 1 5 5 C 1.37877 * 119.99756 * 177.72283 * 3 2 1 6 6 N 1.31512 * 119.99681 * 178.73039 * 5 3 2 7 7 Si 1.86793 * 119.99947 * 358.72608 * 5 3 2 8 8 H 1.48507 * 109.46840 * 113.48875 * 7 5 3 9 9 H 1.48500 * 109.47431 * 233.48378 * 7 5 3 10 10 H 1.48495 * 109.47411 * 353.48711 * 7 5 3 11 11 C 1.52997 * 109.46857 * 240.00645 * 2 1 3 12 12 N 1.46906 * 109.46945 * 172.73570 * 11 2 1 13 13 C 1.52992 * 109.47140 * 120.00299 * 2 1 3 14 14 C 1.53005 * 117.51773 * 244.73648 * 13 2 1 15 15 C 1.52997 * 60.00343 * 107.48153 * 14 13 2 16 16 H 1.08999 * 109.46712 * 299.99502 * 1 2 3 17 17 H 1.08994 * 109.47118 * 59.99411 * 1 2 3 18 18 H 1.08999 * 109.46715 * 179.97438 * 1 2 3 19 19 H 0.97007 * 119.99793 * 179.97438 * 6 5 3 20 20 H 1.08997 * 109.47063 * 292.73133 * 11 2 1 21 21 H 1.09002 * 109.47593 * 52.73340 * 11 2 1 22 22 H 1.00897 * 110.99676 * 188.06215 * 12 11 2 23 23 H 1.00899 * 110.99676 * 312.00923 * 12 11 2 24 24 H 1.08998 * 115.55037 * 99.03865 * 13 2 1 25 25 H 1.08996 * 117.49916 * 214.97138 * 14 13 2 26 26 H 1.09002 * 117.49406 * 359.97438 * 14 13 2 27 27 H 1.08998 * 117.50308 * 252.51821 * 15 14 13 28 28 H 1.08996 * 117.51699 * 107.47935 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 1 1.3312 2.2415 -0.0371 5 6 3.3870 1.6731 0.0474 6 7 3.8263 2.9125 0.0222 7 14 4.5982 0.2547 0.1476 8 1 5.3967 0.1963 -1.1031 9 1 5.5058 0.4594 1.3050 10 1 3.8553 -1.0194 0.3206 11 6 2.0400 -0.7211 -1.2493 12 7 3.4986 -0.5713 -1.3401 13 6 2.0401 -0.7213 1.2491 14 6 2.8217 0.1047 2.2728 15 6 1.3970 -0.3552 2.5884 16 1 -0.3633 0.5138 0.8900 17 1 -0.3633 0.5139 -0.8899 18 1 -0.3633 -1.0277 -0.0005 19 1 4.7794 3.0900 0.0560 20 1 1.7867 -1.7794 -1.1868 21 1 1.5744 -0.2878 -2.1345 22 1 3.8441 -0.9236 -2.2202 23 1 3.7725 0.3901 -1.2028 24 1 2.3424 -1.7582 1.1027 25 1 3.6382 -0.3888 2.7998 26 1 2.9731 1.1622 2.0561 27 1 0.6108 0.3997 2.5794 28 1 1.2759 -1.1514 3.3229 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260948829.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:08 Heat of formation + Delta-G solvation = 95.199532 kcal Electronic energy + Delta-G solvation = -10736.932064 eV Core-core repulsion = 8984.786068 eV Total energy + Delta-G solvation = -1752.145996 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.36554 -36.28086 -34.10802 -32.55988 -27.51097 -26.19978 -23.56296 -23.01103 -20.22197 -19.40807 -17.39309 -16.62845 -16.18727 -15.61691 -15.05494 -14.44595 -14.07524 -13.52184 -13.20431 -12.81840 -12.30810 -12.10928 -11.80135 -11.63976 -11.34192 -10.75203 -10.68961 -10.65404 -10.24813 -8.40971 -8.11712 -6.33089 1.58077 1.71876 2.04819 2.43596 2.97700 3.26207 3.63781 4.05131 4.31701 4.41932 4.51331 4.67644 4.81820 4.89508 4.96647 5.00017 5.10198 5.15419 5.33502 5.48022 5.63402 5.66921 5.75636 5.89432 6.18748 6.37538 6.76940 7.32212 8.86092 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.043136 B = 0.030292 C = 0.027389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.960522 B = 924.099470 C = 1022.076613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.045 3.955 3 C -0.509 4.509 4 H 0.023 0.977 5 C -0.027 4.027 6 N -0.954 5.954 7 Si 1.081 2.919 8 H -0.374 1.374 9 H -0.377 1.377 10 H -0.195 1.195 11 C 0.067 3.933 12 N -0.839 5.839 13 C -0.118 4.118 14 C -0.227 4.227 15 C -0.157 4.157 16 H 0.044 0.956 17 H 0.038 0.962 18 H 0.068 0.932 19 H 0.260 0.740 20 H 0.092 0.908 21 H 0.034 0.966 22 H 0.341 0.659 23 H 0.331 0.669 24 H 0.107 0.893 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.812 -10.475 0.222 11.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.044 3.956 3 C -0.548 4.548 4 H 0.041 0.959 5 C -0.220 4.220 6 N -0.594 5.594 7 Si 0.932 3.068 8 H -0.314 1.314 9 H -0.318 1.318 10 H -0.121 1.121 11 C -0.062 4.062 12 N -0.393 5.393 13 C -0.136 4.136 14 C -0.263 4.263 15 C -0.193 4.193 16 H 0.064 0.936 17 H 0.057 0.943 18 H 0.087 0.913 19 H 0.068 0.932 20 H 0.111 0.889 21 H 0.052 0.948 22 H 0.159 0.841 23 H 0.161 0.839 24 H 0.125 0.875 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.773 -10.763 0.824 11.435 hybrid contribution 0.774 1.155 -1.054 1.744 sum -2.999 -9.609 -0.230 10.068 Atomic orbital electron populations 1.21581 0.94175 1.00987 1.00432 1.18332 0.94397 0.92098 0.90733 1.21175 0.91579 0.91909 1.50093 0.95874 1.26829 1.01775 0.99712 0.93722 1.70122 1.14749 1.22239 1.52273 0.82210 0.72980 0.81936 0.69639 1.31358 1.31787 1.12126 1.22054 0.85602 1.00403 0.98148 1.61002 1.15815 1.25043 1.37397 1.22531 1.02431 0.98020 0.90601 1.23207 0.95595 1.01655 1.05873 1.22963 0.94531 1.02846 0.99001 0.93643 0.94265 0.91267 0.93161 0.88946 0.94799 0.84128 0.83856 0.87549 0.89849 0.89760 0.89997 0.87238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.15 8.07 71.98 0.58 -3.57 15 2 C 0.05 1.94 0.62 -52.93 -0.03 1.91 15 3 C -0.51 -28.21 7.58 25.60 0.19 -28.01 15 4 H 0.02 1.45 7.99 -2.91 -0.02 1.43 15 5 C -0.03 -1.55 3.36 84.65 0.28 -1.27 15 6 N -0.95 -60.91 13.96 21.45 0.30 -60.61 15 7 Si 1.08 54.37 17.99 68.60 1.23 55.60 15 8 H -0.37 -18.91 6.80 99.48 0.68 -18.23 15 9 H -0.38 -20.38 7.11 99.48 0.71 -19.67 15 10 H -0.20 -8.60 3.42 88.62 0.30 -8.30 15 11 C 0.07 2.53 5.62 86.30 0.48 3.02 15 12 N -0.84 -34.83 3.83 -186.71 -0.72 -35.54 15 13 C -0.12 -4.69 3.23 -10.79 -0.03 -4.72 15 14 C -0.23 -9.99 6.31 30.59 0.19 -9.79 15 15 C -0.16 -5.67 9.65 30.60 0.30 -5.37 15 16 H 0.04 1.68 6.60 -2.39 -0.02 1.66 15 17 H 0.04 1.42 8.14 -2.39 -0.02 1.40 15 18 H 0.07 2.02 8.14 -2.39 -0.02 2.01 15 19 H 0.26 15.88 8.31 -92.70 -0.77 15.11 15 20 H 0.09 2.89 8.11 -2.39 -0.02 2.87 15 21 H 0.03 1.26 8.14 -2.39 -0.02 1.24 15 22 H 0.34 11.95 9.07 -89.70 -0.81 11.14 15 23 H 0.33 16.12 2.39 -89.69 -0.21 15.90 15 24 H 0.11 3.84 7.33 -2.39 -0.02 3.83 15 25 H 0.08 3.43 7.84 -2.39 -0.02 3.41 15 26 H 0.08 4.52 4.93 -2.39 -0.01 4.51 15 27 H 0.08 3.08 6.79 -2.39 -0.02 3.06 15 28 H 0.11 3.17 8.14 -2.39 -0.02 3.15 15 Total: -1.00 -66.32 199.47 2.47 -63.85 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.31 Total: 24.51 kcal Atomic # 6 Polarization: -49.78 SS G_CDS: 1.96 Total: -47.81 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -0.42 Total: -96.15 kcal Atomic # 14 Polarization: 54.37 SS G_CDS: 1.23 Total: 55.60 kcal Total: -66.32 2.47 -63.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260948829.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.052 kcal (2) G-P(sol) polarization free energy of solvation -66.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds