Wall clock time and date at job start Mon Mar 30 2020 02:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.57439 * 2 1 4 4 C 1.53120 * 109.52071 * 120.16511 * 2 1 3 5 5 C 1.53034 * 109.27663 * 177.55634 * 4 2 1 6 6 N 1.46850 * 109.52564 * 300.81923 * 5 4 2 7 7 C 1.46850 * 111.19713 * 61.73898 * 6 5 4 8 8 C 1.53036 * 109.52384 * 298.26187 * 7 6 5 9 9 H 1.08992 * 109.50379 * 299.23548 * 8 7 6 10 10 C 1.50705 * 109.49978 * 179.11974 * 8 7 6 11 11 H 1.07997 * 119.99603 * 240.00059 * 10 8 7 12 12 C 1.37871 * 119.99909 * 59.99967 * 10 8 7 13 13 N 1.31516 * 120.00397 * 0.02562 * 12 10 8 14 14 Si 1.86804 * 119.99801 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47286 * 90.00074 * 14 12 10 16 16 H 1.48504 * 109.46892 * 210.00046 * 14 12 10 17 17 H 1.48497 * 109.47143 * 329.99835 * 14 12 10 18 18 H 1.08990 * 109.47580 * 180.15436 * 1 2 3 19 19 H 1.09004 * 109.46960 * 300.15774 * 1 2 3 20 20 H 1.09003 * 109.47123 * 60.15445 * 1 2 3 21 21 H 1.09000 * 109.49976 * 297.49279 * 4 2 1 22 22 H 1.09002 * 109.50465 * 57.57634 * 4 2 1 23 23 H 1.09007 * 109.46201 * 60.83416 * 5 4 2 24 24 H 1.09001 * 109.46272 * 180.79942 * 5 4 2 25 25 H 1.00901 * 110.99645 * 297.64705 * 6 5 4 26 26 H 1.08995 * 109.45831 * 178.23975 * 7 6 5 27 27 H 1.08998 * 109.45719 * 58.27825 * 7 6 5 28 28 H 0.97001 * 120.00033 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7252 1.2477 5 6 3.5707 -0.7754 1.2115 6 7 4.0102 -1.4791 -0.0002 7 6 3.5707 -0.7752 -1.2118 8 6 2.0416 -0.7250 -1.2479 9 1 1.6446 -1.7399 -1.2676 10 6 1.5916 0.0162 -2.4804 11 1 0.9972 0.9127 -2.3844 12 6 1.9387 -0.4503 -3.7305 13 7 2.6621 -1.5423 -3.8475 14 14 1.3802 0.4681 -5.2584 15 1 2.4002 1.4826 -5.6267 16 1 1.2100 -0.4919 -6.3785 17 1 0.0865 1.1437 -4.9846 18 1 -0.3634 -1.0275 0.0028 19 1 -0.3633 0.5163 0.8886 20 1 -0.3633 0.5114 -0.8914 21 1 1.7162 -0.1891 2.1393 22 1 1.6440 -1.7399 1.2677 23 1 3.9674 0.2399 1.2059 24 1 3.9377 -1.3036 2.0916 25 1 3.6874 -2.4351 -0.0002 26 1 3.9377 -1.3034 -2.0918 27 1 3.9674 0.2400 -1.2060 28 1 2.9066 -1.8703 -4.7270 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260952813.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:14 Heat of formation + Delta-G solvation = -23.136297 kcal Electronic energy + Delta-G solvation = -10232.170796 eV Core-core repulsion = 8474.893373 eV Total energy + Delta-G solvation = -1757.277423 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.02069 -33.06981 -32.22686 -29.47162 -26.37168 -24.56735 -21.36170 -21.10973 -18.97104 -16.33842 -14.94143 -14.46237 -13.65301 -13.53999 -13.08218 -12.81726 -11.99575 -11.80578 -11.05162 -10.94999 -10.76204 -10.66460 -10.28645 -10.17854 -10.04445 -9.86641 -9.14762 -8.86101 -8.34169 -7.28741 -5.99017 -4.03038 3.30690 3.37639 3.40376 4.43799 5.28397 5.37158 5.54755 5.76864 5.90509 6.14961 6.20923 6.33120 6.43786 6.60502 6.66994 6.78145 7.02698 7.04291 7.15750 7.32844 7.63629 7.86760 7.99159 8.10272 8.37007 8.53130 8.99714 9.60380 11.07412 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.060457 B = 0.016943 C = 0.014130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.025348 B = 1652.179493 C = 1981.115643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 H 0.054 0.946 4 C -0.150 4.150 5 C 0.059 3.941 6 N -0.697 5.697 7 C 0.058 3.942 8 C 0.024 3.976 9 H 0.023 0.977 10 C -0.507 4.507 11 H 0.056 0.944 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.890 3.110 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.275 1.275 18 H 0.042 0.958 19 H 0.029 0.971 20 H 0.061 0.939 21 H 0.047 0.953 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.330 0.670 26 H 0.103 0.897 27 H 0.043 0.957 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.913 1.175 6.050 6.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.104 4.104 3 H 0.072 0.928 4 C -0.190 4.190 5 C -0.071 4.071 6 N -0.325 5.325 7 C -0.070 4.070 8 C 0.004 3.996 9 H 0.041 0.959 10 C -0.546 4.546 11 H 0.074 0.926 12 C -0.141 4.141 13 N -0.531 5.531 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.200 1.200 18 H 0.061 0.939 19 H 0.048 0.952 20 H 0.080 0.920 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.145 0.855 26 H 0.121 0.879 27 H 0.062 0.938 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.187 1.353 5.903 6.058 hybrid contribution -1.337 0.297 -0.884 1.630 sum -1.523 1.650 5.018 5.498 Atomic orbital electron populations 1.21700 0.96556 1.00582 1.00059 1.21221 0.94802 0.99007 0.95417 0.92760 1.22354 0.97917 1.00306 0.98397 1.21917 0.92734 0.99057 0.93391 1.60914 1.62923 1.05697 1.02932 1.22282 0.96270 0.97438 0.91016 1.19328 0.93301 0.95756 0.91227 0.95863 1.21143 1.32652 1.10395 0.90436 0.92627 1.24981 0.95165 0.94965 0.98965 1.69853 1.37788 1.21978 1.23483 0.86623 0.79048 0.79605 0.82896 1.20709 1.21287 1.20044 0.93893 0.95198 0.92021 0.93429 0.92947 0.92026 0.92624 0.85454 0.87862 0.93798 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.98 37.16 0.33 -2.24 15 2 C -0.09 -1.81 2.24 -90.49 -0.20 -2.01 15 3 H 0.05 1.18 8.14 -51.93 -0.42 0.75 15 4 C -0.15 -2.72 5.36 -26.65 -0.14 -2.86 15 5 C 0.06 1.07 6.55 -3.83 -0.03 1.04 15 6 N -0.70 -14.41 6.87 -113.81 -0.78 -15.19 15 7 C 0.06 1.41 5.60 -3.83 -0.02 1.39 15 8 C 0.02 0.59 1.76 -91.69 -0.16 0.43 15 9 H 0.02 0.63 8.14 -51.93 -0.42 0.21 15 10 C -0.51 -13.79 7.85 -34.44 -0.27 -14.06 15 11 H 0.06 1.50 6.88 -52.49 -0.36 1.14 15 12 C 0.06 1.66 5.30 -17.82 -0.09 1.56 15 13 N -0.89 -25.36 11.33 55.43 0.63 -24.73 15 14 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 15 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 18 H 0.04 0.83 8.14 -51.93 -0.42 0.40 15 19 H 0.03 0.50 8.14 -51.93 -0.42 0.08 15 20 H 0.06 1.28 6.79 -51.93 -0.35 0.93 15 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.05 0.95 8.14 -51.93 -0.42 0.52 15 23 H 0.06 1.12 8.14 -51.92 -0.42 0.69 15 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.33 6.61 8.86 -39.29 -0.35 6.26 15 26 H 0.10 2.79 6.10 -51.93 -0.32 2.47 15 27 H 0.04 1.09 8.14 -51.93 -0.42 0.66 15 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 LS Contribution 222.92 15.07 3.36 3.36 Total: -1.00 -27.50 222.92 -6.72 -34.22 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -4.32 Total: 2.83 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -0.58 Total: -16.76 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: -0.15 Total: -39.92 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -27.50 -6.72 -34.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260952813.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.082 kcal (2) G-P(sol) polarization free energy of solvation -27.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds