Wall clock time and date at job start Mon Mar 30 2020 02:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47327 * 2 1 4 4 C 1.47956 * 111.00069 * 169.99798 * 3 2 1 5 5 C 1.53939 * 86.17817 * 222.41655 * 4 3 2 6 6 C 1.53006 * 113.73184 * 138.07986 * 5 4 3 7 7 C 1.50698 * 109.46914 * 174.99704 * 6 5 4 8 8 H 1.07999 * 120.00165 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00194 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00463 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99963 * 0.02562 * 9 7 6 12 12 H 1.48489 * 109.47043 * 89.99782 * 11 9 7 13 13 H 1.48496 * 109.47157 * 210.00520 * 11 9 7 14 14 H 1.48504 * 109.46658 * 330.00196 * 11 9 7 15 15 C 1.47963 * 110.99920 * 70.63590 * 3 2 1 16 16 H 1.09003 * 109.47054 * 179.97438 * 1 2 3 17 17 H 1.08994 * 109.47270 * 300.00512 * 1 2 3 18 18 H 1.09003 * 109.46569 * 60.00394 * 1 2 3 19 19 H 1.09002 * 109.47378 * 239.99158 * 2 1 3 20 20 H 1.09003 * 109.46569 * 119.99606 * 2 1 3 21 21 H 1.09002 * 113.76134 * 108.09759 * 4 3 2 22 22 H 1.09003 * 113.75805 * 336.73078 * 4 3 2 23 23 H 1.09001 * 113.73297 * 269.24966 * 5 4 3 24 24 H 1.08995 * 109.46794 * 294.99899 * 6 5 4 25 25 H 1.09000 * 109.47314 * 55.00032 * 6 5 4 26 26 H 0.96994 * 119.99914 * 180.02562 * 10 9 7 27 27 H 1.08997 * 113.76042 * 23.26485 * 15 3 2 28 28 H 1.08998 * 113.75718 * 251.90176 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4790 1.4314 0.2399 5 6 3.1837 2.6196 1.1730 6 6 3.9829 2.5917 2.4774 7 6 3.7143 3.8523 3.2582 8 1 3.0406 4.5986 2.8638 9 6 4.3277 4.0525 4.4766 10 7 4.0929 5.1525 5.1583 11 14 5.4924 2.7614 5.1593 12 1 6.8741 3.0472 4.6967 13 1 5.4507 2.7924 6.6434 14 1 5.0779 1.4182 4.6804 15 6 1.7647 2.0376 1.3032 16 1 -0.3633 -1.0277 -0.0005 17 1 -0.3633 0.5139 0.8899 18 1 -0.3632 0.5138 -0.8901 19 1 1.8934 -0.5140 -0.8899 20 1 1.8932 -0.5138 0.8901 21 1 4.0607 1.6995 -0.6420 22 1 3.8673 0.5535 0.7563 23 1 3.2184 3.5882 0.6742 24 1 3.6825 1.7269 3.0690 25 1 5.0469 2.5248 2.2503 26 1 4.5247 5.2934 6.0153 27 1 1.6515 1.3370 2.1305 28 1 0.9767 2.7900 1.2708 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260972898.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:22 Heat of formation + Delta-G solvation = -1.485240 kcal Electronic energy + Delta-G solvation = -9746.721459 eV Core-core repulsion = 7990.382897 eV Total energy + Delta-G solvation = -1756.338563 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.84915 -35.37716 -33.81482 -31.28168 -27.41180 -26.90627 -24.18527 -21.83860 -20.46537 -18.86103 -16.82656 -16.69670 -15.92291 -15.72556 -14.74382 -14.59710 -13.97819 -13.60410 -13.37957 -12.95392 -12.76385 -12.53715 -12.18585 -11.82420 -11.68657 -11.45281 -11.19400 -11.01913 -10.73887 -9.69351 -8.27769 -6.31509 1.36346 1.37889 1.49494 2.36877 3.05982 3.07253 3.76251 3.92702 4.09793 4.26240 4.44647 4.55667 4.63377 4.76200 4.89019 4.89445 4.96115 5.06138 5.10601 5.23399 5.33333 5.48909 5.59443 5.68461 6.20754 6.30384 6.76351 7.32649 8.89293 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.075236 B = 0.011262 C = 0.010902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.071576 B = 2485.671479 C = 2567.672955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.012 3.988 3 N -0.490 5.490 4 C 0.010 3.990 5 C -0.103 4.103 6 C -0.001 4.001 7 C -0.526 4.526 8 H 0.030 0.970 9 C 0.002 3.998 10 N -0.953 5.953 11 Si 0.952 3.048 12 H -0.266 1.266 13 H -0.285 1.285 14 H -0.247 1.247 15 C 0.017 3.983 16 H 0.077 0.923 17 H 0.044 0.956 18 H 0.059 0.941 19 H 0.086 0.914 20 H 0.037 0.963 21 H 0.096 0.904 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.020 0.980 25 H 0.022 0.978 26 H 0.266 0.734 27 H 0.065 0.935 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.321 -12.012 -8.123 14.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 N -0.213 5.213 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.039 4.039 7 C -0.564 4.564 8 H 0.049 0.951 9 C -0.194 4.194 10 N -0.594 5.594 11 Si 0.775 3.225 12 H -0.191 1.191 13 H -0.211 1.211 14 H -0.170 1.170 15 C -0.111 4.111 16 H 0.096 0.904 17 H 0.063 0.937 18 H 0.078 0.922 19 H 0.104 0.896 20 H 0.056 0.944 21 H 0.114 0.886 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.038 0.962 25 H 0.040 0.960 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.584 -11.683 -8.593 14.732 hybrid contribution 0.644 -0.255 1.395 1.558 sum -1.940 -11.938 -7.198 14.074 Atomic orbital electron populations 1.21699 0.94023 1.02445 1.01895 1.22686 0.97345 0.90273 1.01379 1.68507 1.07093 1.15648 1.30095 1.24025 0.90790 0.97826 0.99239 1.22790 0.95534 0.97952 0.95942 1.19519 0.95885 0.95194 0.93313 1.21456 1.26685 1.04311 1.03982 0.95134 1.26040 0.98513 0.97703 0.97163 1.70078 1.45843 1.28374 1.15149 0.85636 0.79301 0.80345 0.77206 1.19081 1.21084 1.17047 1.23814 0.98017 0.98162 0.91144 0.90439 0.93696 0.92209 0.89583 0.94429 0.88608 0.90699 0.90753 0.96207 0.95980 0.92557 0.91635 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.98 71.98 0.72 -2.47 15 2 C 0.01 0.29 5.54 86.30 0.48 0.77 15 3 N -0.49 -15.40 6.26 -907.85 -5.69 -21.09 15 4 C 0.01 0.30 7.54 86.41 0.65 0.96 15 5 C -0.10 -4.11 3.78 -10.15 -0.04 -4.15 15 6 C 0.00 -0.07 3.89 29.85 0.12 0.05 15 7 C -0.53 -30.61 9.65 25.60 0.25 -30.36 15 8 H 0.03 1.96 7.99 -2.91 -0.02 1.94 15 9 C 0.00 0.13 5.47 84.65 0.46 0.59 15 10 N -0.95 -60.46 13.96 21.45 0.30 -60.16 15 11 Si 0.95 44.31 27.47 68.60 1.88 46.19 15 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 13 H -0.28 -13.04 7.11 99.48 0.71 -12.34 15 14 H -0.25 -10.60 6.54 99.48 0.65 -9.95 15 15 C 0.02 0.63 6.66 86.40 0.58 1.20 15 16 H 0.08 1.36 8.14 -2.39 -0.02 1.34 15 17 H 0.04 1.09 7.54 -2.39 -0.02 1.07 15 18 H 0.06 1.33 8.14 -2.39 -0.02 1.31 15 19 H 0.09 1.89 8.14 -2.39 -0.02 1.87 15 20 H 0.04 0.95 7.69 -2.39 -0.02 0.93 15 21 H 0.10 2.71 8.14 -2.39 -0.02 2.69 15 22 H 0.07 2.19 7.75 -2.39 -0.02 2.17 15 23 H 0.07 3.18 8.12 -2.39 -0.02 3.16 15 24 H 0.02 0.90 6.89 -2.39 -0.02 0.89 15 25 H 0.02 0.99 7.57 -2.39 -0.02 0.98 15 26 H 0.27 15.68 8.31 -92.71 -0.77 14.91 15 27 H 0.07 2.35 7.53 -2.39 -0.02 2.33 15 28 H 0.07 2.72 8.14 -2.39 -0.02 2.70 15 Total: -1.00 -64.37 231.05 0.76 -63.62 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 1.05 Total: 4.86 kcal Atomic # 6 Polarization: -36.63 SS G_CDS: 3.21 Total: -33.42 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -5.39 Total: -81.25 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.19 kcal Total: -64.37 0.76 -63.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260972898.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.132 kcal (2) G-P(sol) polarization free energy of solvation -64.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds