Wall clock time and date at job start Mon Mar 30 2020 02:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47475 * 2 1 4 4 C 1.52997 * 109.47582 * 120.00257 * 2 1 3 5 5 H 1.08996 * 109.47501 * 179.97438 * 4 2 1 6 6 N 1.46907 * 109.46913 * 59.99588 * 4 2 1 7 7 C 1.50709 * 109.47046 * 300.00142 * 4 2 1 8 8 H 1.08003 * 119.99620 * 359.97438 * 7 4 2 9 9 C 1.37870 * 119.99707 * 179.97438 * 7 4 2 10 10 N 1.31514 * 120.00496 * 359.97438 * 9 7 4 11 11 Si 1.86802 * 119.99637 * 179.97438 * 9 7 4 12 12 H 1.48506 * 109.46782 * 60.00552 * 11 9 7 13 13 H 1.48498 * 109.47184 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47419 * 300.00226 * 11 9 7 15 15 C 1.53003 * 109.46999 * 240.00445 * 2 1 3 16 16 C 1.53001 * 117.51964 * 111.28362 * 15 2 1 17 17 C 1.52999 * 60.00190 * 107.47982 * 16 15 2 18 18 H 1.09003 * 109.46840 * 300.00158 * 1 2 3 19 19 H 1.09000 * 109.47179 * 59.99381 * 1 2 3 20 20 H 1.08996 * 109.47327 * 180.02562 * 1 2 3 21 21 H 1.00896 * 110.99827 * 176.04845 * 6 4 2 22 22 H 1.00900 * 111.00198 * 300.00570 * 6 4 2 23 23 H 0.97001 * 120.00063 * 179.97438 * 10 9 7 24 24 H 1.09002 * 115.54973 * 325.58146 * 15 2 1 25 25 H 1.09001 * 117.49733 * 214.97413 * 16 15 2 26 26 H 1.08995 * 117.49577 * 359.97438 * 16 15 2 27 27 H 1.09004 * 117.50150 * 252.51496 * 17 16 15 28 28 H 1.09004 * 117.51638 * 107.47550 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1300 -0.7217 1.2489 6 7 1.5503 -2.1063 1.2491 7 6 1.5377 -0.0109 2.4797 8 1 0.9171 0.8674 2.3806 9 6 1.8705 -0.4823 3.7319 10 7 2.6258 -1.5521 3.8525 11 14 1.2484 0.3986 5.2572 12 1 -0.2366 0.3995 5.2571 13 1 1.7424 -0.3022 6.4696 14 1 1.7443 1.7983 5.2573 15 6 2.0399 -0.7212 -1.2493 16 6 2.7399 0.1227 -2.3165 17 6 3.5550 -0.8262 -1.4355 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 1.9259 -2.6226 2.0304 22 1 0.5417 -2.1332 1.2491 23 1 2.8602 -1.8836 4.7335 24 1 1.4318 -1.5594 -1.5895 25 1 2.5922 -0.1603 -3.3587 26 1 2.8369 1.1920 -2.1288 27 1 4.1884 -0.3812 -0.6680 28 1 3.9435 -1.7337 -1.8977 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260983547.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:03 Heat of formation + Delta-G solvation = 4.546016 kcal Electronic energy + Delta-G solvation = -10029.163774 eV Core-core repulsion = 8273.086746 eV Total energy + Delta-G solvation = -1756.077028 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.60476 -34.43505 -31.68659 -29.20543 -25.82145 -23.81999 -21.74247 -21.03088 -18.20031 -16.32901 -15.27233 -14.54328 -14.11298 -13.79394 -12.59333 -12.34036 -11.87062 -11.69605 -11.06079 -10.97270 -10.94404 -10.53006 -10.44062 -10.08069 -9.66706 -9.63109 -9.32336 -8.76224 -8.44946 -7.01001 -5.96700 -4.12956 3.27640 3.33036 3.35493 4.38415 4.57240 5.24062 5.40683 5.65793 5.71323 6.05806 6.16262 6.29412 6.34849 6.48114 6.59939 6.71334 6.72637 6.95549 7.09993 7.20523 7.33715 7.83914 7.87432 8.28732 8.84083 9.12403 9.29066 9.58938 10.99874 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.069120 B = 0.013934 C = 0.013148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.997623 B = 2009.026230 C = 2129.087305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.051 4.051 3 H 0.052 0.948 4 C 0.220 3.780 5 H 0.035 0.965 6 N -0.849 5.849 7 C -0.547 4.547 8 H 0.054 0.946 9 C 0.063 3.937 10 N -0.895 5.895 11 Si 0.891 3.109 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.278 1.278 15 C -0.109 4.109 16 C -0.204 4.204 17 C -0.174 4.174 18 H 0.057 0.943 19 H 0.030 0.970 20 H 0.051 0.949 21 H 0.349 0.651 22 H 0.308 0.692 23 H 0.263 0.737 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 1.561 -6.242 6.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.070 4.070 3 H 0.071 0.929 4 C 0.109 3.891 5 H 0.053 0.947 6 N -0.378 5.378 7 C -0.586 4.586 8 H 0.072 0.928 9 C -0.138 4.138 10 N -0.535 5.535 11 Si 0.719 3.281 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.127 4.127 16 C -0.241 4.241 17 C -0.211 4.211 18 H 0.076 0.924 19 H 0.049 0.951 20 H 0.070 0.930 21 H 0.164 0.836 22 H 0.117 0.883 23 H 0.073 0.927 24 H 0.114 0.886 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.130 1.374 -6.810 7.038 hybrid contribution -0.669 0.758 1.909 2.160 sum -1.799 2.132 -4.901 5.639 Atomic orbital electron populations 1.21681 0.96334 1.01020 0.99851 1.20793 0.94924 0.97443 0.93833 0.92923 1.18865 0.95311 0.85905 0.88970 0.94718 1.59498 1.11119 1.15936 1.51254 1.22034 1.31777 1.12855 0.91978 0.92813 1.25024 0.94656 0.95123 0.99032 1.69746 1.36888 1.23075 1.23798 0.86688 0.79115 0.79883 0.82447 1.20380 1.21338 1.20342 1.22213 0.94130 1.00015 0.96356 1.23036 1.07861 0.97340 0.95899 1.22746 0.95665 1.00416 1.02265 0.92362 0.95122 0.93014 0.83599 0.88289 0.92711 0.88647 0.90164 0.89702 0.89146 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.59 37.16 0.32 -2.23 15 2 C -0.05 -1.07 2.38 -90.62 -0.22 -1.29 15 3 H 0.05 1.13 7.90 -51.93 -0.41 0.72 15 4 C 0.22 5.47 2.38 -68.86 -0.16 5.30 15 5 H 0.03 0.97 7.29 -51.93 -0.38 0.59 15 6 N -0.85 -20.39 8.72 -5.65 -0.05 -20.44 15 7 C -0.55 -14.79 8.00 -34.44 -0.28 -15.06 15 8 H 0.05 1.45 6.71 -52.48 -0.35 1.09 15 9 C 0.06 1.74 5.38 -17.82 -0.10 1.64 15 10 N -0.90 -25.27 11.54 55.43 0.64 -24.63 15 11 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 15 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 15 C -0.11 -2.04 4.76 -90.61 -0.43 -2.47 15 16 C -0.20 -3.30 10.18 -26.73 -0.27 -3.58 15 17 C -0.17 -3.11 9.74 -26.73 -0.26 -3.37 15 18 H 0.06 1.19 6.62 -51.93 -0.34 0.85 15 19 H 0.03 0.52 8.14 -51.93 -0.42 0.09 15 20 H 0.05 0.98 6.66 -51.93 -0.35 0.64 15 21 H 0.35 9.12 7.08 -39.29 -0.28 8.84 15 22 H 0.31 7.11 7.16 -39.29 -0.28 6.83 15 23 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 24 H 0.10 1.79 8.11 -51.93 -0.42 1.37 15 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 26 H 0.08 1.34 8.05 -51.93 -0.42 0.92 15 27 H 0.09 1.73 7.61 -51.93 -0.40 1.33 15 28 H 0.08 1.37 8.14 -51.93 -0.42 0.95 15 LS Contribution 228.43 15.07 3.44 3.44 Total: -1.00 -27.13 228.43 -6.41 -33.54 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -4.03 Total: 12.91 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -1.39 Total: -21.06 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.59 Total: -45.07 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -27.13 -6.41 -33.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983547.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.084 kcal (2) G-P(sol) polarization free energy of solvation -27.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds