Wall clock time and date at job start Mon Mar 30 2020 01:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09007 * 110.28841 * 304.33357 * 3 2 1 5 5 C 1.54377 * 110.32340 * 66.45297 * 3 2 1 6 6 N 1.48563 * 104.59659 * 142.75024 * 5 3 2 7 7 C 1.48566 * 104.22079 * 320.52023 * 6 5 3 8 8 C 1.54261 * 110.32744 * 182.09460 * 3 2 1 9 9 H 1.08998 * 110.32707 * 122.20787 * 8 3 2 10 10 C 1.50698 * 110.31933 * 359.97438 * 8 3 2 11 11 H 1.07996 * 120.00179 * 0.02562 * 10 8 3 12 12 C 1.37882 * 119.99667 * 180.02562 * 10 8 3 13 13 N 1.31512 * 120.00056 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 119.99717 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47144 * 60.00222 * 14 12 10 16 16 H 1.48501 * 109.46817 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47180 * 299.99646 * 14 12 10 18 18 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 19 19 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 21 21 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 22 22 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 23 23 H 1.08998 * 110.41928 * 261.52807 * 5 3 2 24 24 H 1.08998 * 110.41255 * 23.85456 * 5 3 2 25 25 H 1.00901 * 111.00046 * 80.07372 * 6 5 3 26 26 H 1.08995 * 110.41165 * 158.25598 * 7 6 5 27 27 H 1.08997 * 110.40813 * 280.70384 * 7 6 5 28 28 H 0.97001 * 119.99679 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6223 1.9911 -0.8443 5 6 1.6734 2.1408 1.3271 6 7 2.8441 3.0031 1.6323 7 6 4.0167 2.1763 1.2469 8 6 3.5815 1.4659 -0.0529 9 1 3.9220 2.0268 -0.9232 10 6 4.1253 0.0609 -0.0881 11 1 3.4485 -0.7806 -0.0751 12 6 5.4870 -0.1503 -0.1370 13 7 6.3111 0.8744 -0.1524 14 14 6.1610 -1.8919 -0.1814 15 1 5.6460 -2.5914 -1.3859 16 1 7.6445 -1.8473 -0.2319 17 1 5.7285 -2.6213 1.0375 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.8934 -0.5139 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 0.7766 2.7476 1.2025 24 1 1.5260 1.4037 2.1164 25 1 2.8128 3.8579 1.0971 26 1 4.8841 2.8098 1.0616 27 1 4.2380 1.4448 2.0241 28 1 7.2691 0.7258 -0.1871 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260987614.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:52 Heat of formation + Delta-G solvation = -11.824794 kcal Electronic energy + Delta-G solvation = -10169.395797 eV Core-core repulsion = 8412.608878 eV Total energy + Delta-G solvation = -1756.786919 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.05720 -32.80448 -32.59955 -28.65013 -26.82658 -24.12166 -22.37525 -20.49427 -18.69487 -15.80849 -15.52376 -14.46847 -14.15329 -13.46929 -12.69416 -12.51436 -12.28691 -11.89991 -11.39320 -10.93835 -10.89389 -10.53107 -10.32448 -10.04347 -9.84369 -9.52773 -9.12489 -8.62816 -8.43380 -7.68477 -6.00344 -4.01073 3.32488 3.37529 3.39589 4.45025 5.31385 5.34067 5.62715 5.78900 5.85874 6.00186 6.16071 6.26500 6.46590 6.50164 6.73136 6.80146 6.97068 7.04944 7.19196 7.24828 7.50518 7.66089 7.84777 7.97989 8.29521 8.47924 9.00745 9.62775 11.10360 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.048299 B = 0.018338 C = 0.014185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.587576 B = 1526.534894 C = 1973.502075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.097 4.097 3 C -0.118 4.118 4 H 0.047 0.953 5 C 0.049 3.951 6 N -0.688 5.688 7 C 0.063 3.937 8 C 0.022 3.978 9 H 0.026 0.974 10 C -0.517 4.517 11 H 0.071 0.929 12 C 0.060 3.940 13 N -0.893 5.893 14 Si 0.889 3.111 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.277 1.277 18 H 0.043 0.957 19 H 0.043 0.957 20 H 0.046 0.954 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.320 0.680 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.964 0.099 0.564 6.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.135 4.135 3 C -0.139 4.139 4 H 0.065 0.935 5 C -0.081 4.081 6 N -0.314 5.314 7 C -0.066 4.066 8 C 0.002 3.998 9 H 0.044 0.956 10 C -0.555 4.555 11 H 0.089 0.911 12 C -0.141 4.141 13 N -0.531 5.531 14 Si 0.717 3.283 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.203 1.203 18 H 0.062 0.938 19 H 0.062 0.938 20 H 0.066 0.934 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.068 0.932 24 H 0.087 0.913 25 H 0.133 0.867 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.726 0.056 1.330 6.857 hybrid contribution 0.509 -0.938 -1.118 1.545 sum -6.217 -0.881 0.212 6.283 Atomic orbital electron populations 1.21935 0.98372 1.00242 1.00699 1.21518 0.92151 0.97218 1.02604 1.22519 0.99344 0.95564 0.96424 0.93497 1.22976 0.93036 0.95726 0.96401 1.63512 1.04103 1.06408 1.57332 1.23059 0.90861 0.95098 0.97608 1.19954 0.88204 0.96993 0.94604 0.95599 1.21445 0.91504 0.92114 1.50442 0.91107 1.25037 0.97311 0.96593 0.95188 1.69956 1.02841 1.29724 1.50622 0.86711 0.77790 0.85272 0.78551 1.20390 1.21396 1.20275 0.93758 0.93831 0.93446 0.91656 0.91601 0.93182 0.91325 0.86729 0.92013 0.91569 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.76 37.16 0.36 -2.05 15 2 C -0.10 -1.88 3.78 -26.73 -0.10 -1.98 15 3 C -0.12 -2.44 3.09 -89.24 -0.28 -2.72 15 4 H 0.05 0.93 8.14 -51.92 -0.42 0.51 15 5 C 0.05 0.93 6.13 -2.18 -0.01 0.91 15 6 N -0.69 -14.13 7.62 -109.66 -0.84 -14.97 15 7 C 0.06 1.51 6.18 -2.18 -0.01 1.50 15 8 C 0.02 0.56 2.94 -90.39 -0.27 0.29 15 9 H 0.03 0.71 8.14 -51.93 -0.42 0.28 15 10 C -0.52 -13.89 7.54 -34.44 -0.26 -14.15 15 11 H 0.07 1.84 4.74 -52.49 -0.25 1.59 15 12 C 0.06 1.66 5.34 -17.82 -0.10 1.57 15 13 N -0.89 -25.73 12.56 55.43 0.70 -25.03 15 14 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 15 15 H -0.28 -6.60 7.11 56.52 0.40 -6.19 15 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 17 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 18 H 0.04 0.65 8.14 -51.93 -0.42 0.23 15 19 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 20 H 0.05 0.69 7.48 -51.93 -0.39 0.30 15 21 H 0.06 1.34 7.20 -51.93 -0.37 0.97 15 22 H 0.07 1.36 7.00 -51.93 -0.36 0.99 15 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.07 1.33 7.80 -51.93 -0.40 0.92 15 25 H 0.32 6.00 8.92 -39.29 -0.35 5.65 15 26 H 0.06 1.57 8.03 -51.93 -0.42 1.15 15 27 H 0.07 1.73 7.85 -51.93 -0.41 1.32 15 28 H 0.26 7.19 8.31 -40.82 -0.34 6.86 15 LS Contribution 223.85 15.07 3.37 3.37 Total: -1.00 -27.80 223.85 -6.65 -34.46 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.20 Total: 2.51 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -0.66 Total: -16.63 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: -0.14 Total: -40.00 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -27.80 -6.65 -34.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260987614.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.632 kcal (2) G-P(sol) polarization free energy of solvation -27.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds