Wall clock time and date at job start Mon Mar 30 2020 01:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47091 * 2 1 4 4 H 1.09001 * 110.29067 * 55.67380 * 3 2 1 5 5 C 1.54388 * 110.32306 * 293.54548 * 3 2 1 6 6 N 1.48558 * 104.59594 * 217.25148 * 5 3 2 7 7 C 1.48568 * 104.22068 * 39.48270 * 6 5 3 8 8 C 1.54268 * 110.32659 * 177.91222 * 3 2 1 9 9 H 1.09003 * 110.32138 * 237.79184 * 8 3 2 10 10 C 1.50704 * 110.31855 * 359.97438 * 8 3 2 11 11 H 1.07996 * 120.00445 * 0.02562 * 10 8 3 12 12 C 1.37884 * 119.99281 * 179.97438 * 10 8 3 13 13 N 1.31507 * 120.00016 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 119.99406 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47025 * 90.00758 * 14 12 10 16 16 H 1.48503 * 109.46842 * 210.00074 * 14 12 10 17 17 H 1.48495 * 109.47292 * 330.00441 * 14 12 10 18 18 H 1.08996 * 109.47537 * 60.00290 * 1 2 3 19 19 H 1.09009 * 109.46763 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47196 * 299.99842 * 1 2 3 21 21 H 1.09002 * 109.47473 * 239.99427 * 2 1 3 22 22 H 1.09005 * 109.47350 * 119.99558 * 2 1 3 23 23 H 1.08999 * 110.40932 * 98.47279 * 5 3 2 24 24 H 1.09004 * 110.40796 * 336.02826 * 5 3 2 25 25 H 1.00901 * 110.99875 * 159.03649 * 6 5 3 26 26 H 1.08998 * 110.41219 * 79.29956 * 7 6 5 27 27 H 1.09002 * 110.40575 * 201.73911 * 7 6 5 28 28 H 0.97001 * 119.99794 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6224 1.9910 0.8443 5 6 1.6734 2.1408 -1.3272 6 7 2.8440 3.0030 -1.6323 7 6 4.0167 2.1762 -1.2470 8 6 3.5815 1.4658 0.0527 9 1 3.9221 2.0268 0.9231 10 6 4.1253 0.0608 0.0891 11 1 3.4485 -0.7807 0.0760 12 6 5.4870 -0.1503 0.1380 13 7 6.3111 0.8744 0.1535 14 14 6.1610 -1.8919 0.1824 15 1 6.3874 -2.3706 -1.2050 16 1 7.4458 -1.9066 0.9269 17 1 5.1857 -2.7830 0.8606 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3633 -1.0278 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.8934 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8901 23 1 0.7766 2.7476 -1.2024 24 1 1.5280 1.4037 -2.1170 25 1 2.8741 3.2382 -2.6131 26 1 4.2380 1.4447 -2.0242 27 1 4.8841 2.8097 -1.0618 28 1 7.2690 0.7259 0.1883 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260987615.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:53 Heat of formation + Delta-G solvation = -30.218974 kcal Electronic energy + Delta-G solvation = -10161.722702 eV Core-core repulsion = 8404.138152 eV Total energy + Delta-G solvation = -1757.584551 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.69754 -34.70019 -34.38761 -30.66568 -28.49475 -26.28200 -23.97965 -21.94377 -20.52013 -17.81310 -17.23860 -16.29434 -16.19592 -15.17553 -14.38906 -14.19072 -13.92383 -13.49679 -13.05106 -12.79951 -12.71846 -12.40390 -11.97865 -11.79255 -11.65171 -11.22819 -10.91833 -10.57630 -10.48560 -9.38386 -8.11358 -6.19554 1.40737 1.41877 1.51732 2.43757 3.20017 3.64541 4.06107 4.20050 4.38044 4.60962 4.65574 4.74372 4.78902 4.96670 5.07538 5.26156 5.28729 5.35764 5.44429 5.60631 5.69489 5.76018 5.87275 5.97631 6.43777 6.61977 6.94298 7.48797 8.99224 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.048097 B = 0.018317 C = 0.014190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.022505 B = 1528.245953 C = 1972.699022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.087 4.087 4 H 0.057 0.943 5 C 0.051 3.949 6 N -0.681 5.681 7 C 0.075 3.925 8 C 0.039 3.961 9 H -0.009 1.009 10 C -0.530 4.530 11 H 0.081 0.919 12 C 0.007 3.993 13 N -0.925 5.925 14 Si 0.952 3.048 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.264 1.264 18 H 0.059 0.941 19 H 0.059 0.941 20 H 0.055 0.945 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.088 0.912 24 H 0.039 0.961 25 H 0.333 0.667 26 H 0.011 0.989 27 H 0.040 0.960 28 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.608 -1.519 -2.633 9.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 C -0.106 4.106 4 H 0.075 0.925 5 C -0.078 4.078 6 N -0.309 5.309 7 C -0.055 4.055 8 C 0.020 3.980 9 H 0.009 0.991 10 C -0.568 4.568 11 H 0.099 0.901 12 C -0.192 4.192 13 N -0.565 5.565 14 Si 0.778 3.222 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.188 1.188 18 H 0.078 0.922 19 H 0.078 0.922 20 H 0.074 0.926 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.106 0.894 24 H 0.058 0.942 25 H 0.148 0.852 26 H 0.030 0.970 27 H 0.059 0.941 28 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.455 -1.024 -2.023 8.754 hybrid contribution 1.112 -1.280 -0.598 1.798 sum -7.343 -2.304 -2.621 8.130 Atomic orbital electron populations 1.21830 0.94780 1.01753 1.01918 1.21459 0.95309 0.95541 1.01075 1.21904 0.96052 0.95996 0.96647 0.92484 1.22922 0.93949 0.94603 0.96336 1.63761 1.03175 1.39995 1.24019 1.22621 0.91976 0.93206 0.97680 1.19388 0.91570 0.94649 0.92382 0.99120 1.21967 0.91943 0.93333 1.49589 0.90115 1.25874 0.97860 1.00360 0.95072 1.70127 1.02879 1.31726 1.51770 0.85641 0.77770 0.80731 0.78069 1.20316 1.21368 1.18790 0.92192 0.92199 0.92622 0.93233 0.93092 0.89397 0.94239 0.85210 0.97034 0.94094 0.93289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.76 71.98 0.70 -3.32 15 2 C -0.10 -3.56 3.78 30.59 0.12 -3.45 15 3 C -0.09 -3.59 3.09 -9.89 -0.03 -3.62 15 4 H 0.06 2.29 8.14 -2.39 -0.02 2.27 15 5 C 0.05 1.83 6.13 86.45 0.53 2.36 15 6 N -0.68 -27.37 7.62 -500.83 -3.82 -31.18 15 7 C 0.07 3.70 6.18 86.45 0.53 4.23 15 8 C 0.04 2.04 2.94 -10.64 -0.03 2.01 15 9 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 15 10 C -0.53 -28.88 7.54 25.60 0.19 -28.69 15 11 H 0.08 4.17 4.74 -2.91 -0.01 4.16 15 12 C 0.01 0.37 5.34 84.66 0.45 0.82 15 13 N -0.93 -55.01 12.56 21.45 0.27 -54.74 15 14 Si 0.95 43.78 29.54 68.60 2.03 45.81 15 15 H -0.28 -12.45 7.11 99.48 0.71 -11.75 15 16 H -0.29 -13.18 7.11 99.48 0.71 -12.47 15 17 H -0.26 -11.58 7.11 99.48 0.71 -10.87 15 18 H 0.06 1.50 7.48 -2.39 -0.02 1.48 15 19 H 0.06 1.47 8.14 -2.38 -0.02 1.45 15 20 H 0.05 1.44 8.14 -2.39 -0.02 1.42 15 21 H 0.05 1.94 7.20 -2.39 -0.02 1.93 15 22 H 0.05 2.05 7.00 -2.38 -0.02 2.03 15 23 H 0.09 2.69 8.14 -2.39 -0.02 2.67 15 24 H 0.04 1.35 7.80 -2.38 -0.02 1.33 15 25 H 0.33 11.47 8.92 -89.69 -0.80 10.67 15 26 H 0.01 0.59 7.86 -2.39 -0.02 0.57 15 27 H 0.04 2.23 8.04 -2.39 -0.02 2.21 15 28 H 0.26 14.65 8.31 -92.71 -0.77 13.88 15 Total: -1.00 -60.63 223.86 1.27 -59.36 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.33 Total: 10.41 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 2.47 Total: -29.65 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -3.55 Total: -85.92 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -60.63 1.27 -59.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260987615.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.141 kcal (2) G-P(sol) polarization free energy of solvation -60.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds