Wall clock time and date at job start Mon Mar 30 2020 01:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46811 * 2 1 4 4 H 1.08997 * 110.64376 * 308.15264 * 3 2 1 5 5 C 1.54942 * 110.72322 * 71.50169 * 3 2 1 6 6 N 1.48530 * 103.22474 * 155.76889 * 5 3 2 7 7 C 1.47896 * 105.82299 * 320.79269 * 6 5 3 8 8 C 1.53991 * 107.05864 * 25.33116 * 7 6 5 9 9 H 1.09007 * 110.39382 * 239.81914 * 8 7 6 10 10 C 1.50696 * 110.31216 * 117.69415 * 8 7 6 11 11 H 1.08000 * 120.00093 * 244.28265 * 10 8 7 12 12 C 1.37879 * 119.99878 * 64.27982 * 10 8 7 13 13 N 1.31512 * 120.00014 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 119.99882 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46980 * 90.00259 * 14 12 10 16 16 H 1.48500 * 109.47433 * 210.00074 * 14 12 10 17 17 H 1.48498 * 109.47370 * 330.00336 * 14 12 10 18 18 H 1.09009 * 109.47170 * 300.00068 * 1 2 3 19 19 H 1.09001 * 109.47273 * 59.99848 * 1 2 3 20 20 H 1.09002 * 109.46911 * 179.97438 * 1 2 3 21 21 H 1.08992 * 109.47188 * 240.00244 * 2 1 3 22 22 H 1.08997 * 109.46828 * 119.99963 * 2 1 3 23 23 H 1.08998 * 110.66368 * 274.20499 * 5 3 2 24 24 H 1.08994 * 110.66862 * 37.33123 * 5 3 2 25 25 H 1.00899 * 110.99750 * 200.27337 * 6 5 3 26 26 H 1.09002 * 109.91541 * 265.97907 * 7 6 5 27 27 H 1.08997 * 109.91844 * 144.68470 * 7 6 5 28 28 H 0.97001 * 120.00295 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5739 2.0149 -0.8021 5 6 1.7892 2.1127 1.3743 6 7 2.8153 3.1855 1.4215 7 6 4.0355 2.6031 0.8221 8 6 3.5803 1.4783 -0.1260 9 1 4.0074 0.5244 0.1837 10 6 3.9820 1.7945 -1.5436 11 1 3.2244 1.9575 -2.2960 12 6 5.3166 1.8758 -1.8802 13 7 6.2390 1.6770 -0.9642 14 14 5.8144 2.2685 -3.6373 15 1 5.9396 3.7394 -3.7993 16 1 7.1183 1.6247 -3.9380 17 1 4.7811 1.7539 -4.5714 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8933 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 0.7863 2.5374 1.4178 24 1 1.9412 1.3990 2.1838 25 1 2.9849 3.4821 2.3709 26 1 4.6744 2.1934 1.6045 27 1 4.5743 3.3665 0.2608 28 1 7.1780 1.7338 -1.2010 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260987616.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:55 Heat of formation + Delta-G solvation = -19.125325 kcal Electronic energy + Delta-G solvation = -10048.070071 eV Core-core repulsion = 8290.966577 eV Total energy + Delta-G solvation = -1757.103494 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.80214 -32.96381 -32.58545 -28.79782 -26.94530 -24.26565 -22.30677 -19.96208 -18.86285 -16.27974 -15.31593 -14.63054 -14.19698 -13.47125 -12.75824 -12.46705 -11.99131 -11.62337 -11.55805 -11.34381 -10.79902 -10.66663 -10.53050 -10.25581 -9.86112 -9.60321 -8.98605 -8.84868 -8.38848 -7.54135 -5.98525 -4.00255 3.34128 3.40371 3.43777 4.47750 5.22432 5.34309 5.56235 5.69178 5.77936 5.95391 6.08867 6.22584 6.37552 6.49782 6.56734 6.61781 6.82143 6.99553 7.09896 7.22153 7.50500 7.78962 7.90249 8.06665 8.27024 8.51508 9.02494 9.63242 11.11582 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.052370 B = 0.015839 C = 0.013395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.525702 B = 1767.400659 C = 2089.836397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.087 4.087 4 H 0.072 0.928 5 C 0.043 3.957 6 N -0.681 5.681 7 C 0.064 3.936 8 C 0.046 3.954 9 H 0.030 0.970 10 C -0.504 4.504 11 H 0.056 0.944 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.275 1.275 18 H 0.048 0.952 19 H 0.050 0.950 20 H 0.043 0.957 21 H 0.064 0.936 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.025 0.975 25 H 0.315 0.685 26 H 0.013 0.987 27 H 0.077 0.923 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.667 -1.282 2.841 7.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.106 4.106 4 H 0.090 0.910 5 C -0.087 4.087 6 N -0.308 5.308 7 C -0.065 4.065 8 C 0.027 3.973 9 H 0.048 0.952 10 C -0.542 4.542 11 H 0.074 0.926 12 C -0.142 4.142 13 N -0.533 5.533 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.199 1.199 18 H 0.067 0.933 19 H 0.070 0.930 20 H 0.062 0.938 21 H 0.083 0.917 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.044 0.956 25 H 0.128 0.872 26 H 0.031 0.969 27 H 0.096 0.904 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.680 -0.907 2.266 7.112 hybrid contribution 0.799 -0.379 -0.155 0.897 sum -5.882 -1.286 2.111 6.380 Atomic orbital electron populations 1.21800 0.97135 1.00352 1.01287 1.21483 0.94275 0.97531 1.01555 1.22222 0.99323 0.93755 0.95316 0.91005 1.23025 0.95631 0.92666 0.97341 1.63186 1.09790 1.35843 1.22008 1.22802 0.89105 0.98522 0.96028 1.19540 0.88491 0.94085 0.95198 0.95150 1.21172 0.91567 1.47389 0.94063 0.92559 1.25003 0.96765 0.95353 0.97118 1.69968 1.00325 1.49994 1.32982 0.86610 0.77809 0.78484 0.85208 1.20679 1.21353 1.19950 0.93315 0.93040 0.93764 0.91704 0.93071 0.92120 0.95630 0.87151 0.96888 0.90434 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.80 37.16 0.36 -1.84 15 2 C -0.11 -2.01 5.31 -26.73 -0.14 -2.16 15 3 C -0.09 -1.85 2.57 -88.75 -0.23 -2.08 15 4 H 0.07 1.61 7.68 -51.93 -0.40 1.21 15 5 C 0.04 0.82 6.40 -1.90 -0.01 0.81 15 6 N -0.68 -14.30 7.51 -110.09 -0.83 -15.12 15 7 C 0.06 1.58 6.42 -2.76 -0.02 1.56 15 8 C 0.05 1.17 2.45 -90.42 -0.22 0.95 15 9 H 0.03 0.84 7.85 -51.93 -0.41 0.43 15 10 C -0.50 -14.09 8.33 -34.44 -0.29 -14.37 15 11 H 0.06 1.57 7.54 -52.49 -0.40 1.17 15 12 C 0.06 1.65 5.12 -17.82 -0.09 1.56 15 13 N -0.89 -26.06 12.55 55.43 0.70 -25.36 15 14 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 15 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 15 18 H 0.05 0.67 7.66 -51.92 -0.40 0.28 15 19 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 20 H 0.04 0.58 8.14 -51.93 -0.42 0.15 15 21 H 0.06 1.25 8.14 -51.93 -0.42 0.82 15 22 H 0.05 0.91 7.99 -51.93 -0.42 0.49 15 23 H 0.06 1.05 8.12 -51.93 -0.42 0.63 15 24 H 0.03 0.46 7.94 -51.93 -0.41 0.05 15 25 H 0.32 5.75 8.92 -39.29 -0.35 5.40 15 26 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 15 27 H 0.08 2.14 7.32 -51.93 -0.38 1.76 15 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 LS Contribution 229.21 15.07 3.45 3.45 Total: -1.00 -28.82 229.21 -6.74 -35.56 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -4.41 Total: 0.39 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -0.64 Total: -15.56 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: -0.13 Total: -40.49 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -28.82 -6.74 -35.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260987616.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.435 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds