Wall clock time and date at job start Mon Mar 30 2020 01:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46811 * 2 1 4 4 H 1.08997 * 110.64376 * 308.15264 * 3 2 1 5 5 C 1.54942 * 110.72322 * 71.50169 * 3 2 1 6 6 N 1.48530 * 103.22474 * 155.76889 * 5 3 2 7 7 C 1.47896 * 105.82299 * 320.79269 * 6 5 3 8 8 C 1.53991 * 107.05864 * 25.33116 * 7 6 5 9 9 H 1.09007 * 110.39382 * 239.81914 * 8 7 6 10 10 C 1.50696 * 110.31216 * 117.69415 * 8 7 6 11 11 H 1.08000 * 120.00093 * 244.28265 * 10 8 7 12 12 C 1.37879 * 119.99878 * 64.27982 * 10 8 7 13 13 N 1.31512 * 120.00014 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 119.99882 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46980 * 90.00259 * 14 12 10 16 16 H 1.48500 * 109.47433 * 210.00074 * 14 12 10 17 17 H 1.48498 * 109.47370 * 330.00336 * 14 12 10 18 18 H 1.09009 * 109.47170 * 300.00068 * 1 2 3 19 19 H 1.09001 * 109.47273 * 59.99848 * 1 2 3 20 20 H 1.09002 * 109.46911 * 179.97438 * 1 2 3 21 21 H 1.08992 * 109.47188 * 240.00244 * 2 1 3 22 22 H 1.08997 * 109.46828 * 119.99963 * 2 1 3 23 23 H 1.08998 * 110.66368 * 274.20499 * 5 3 2 24 24 H 1.08994 * 110.66862 * 37.33123 * 5 3 2 25 25 H 1.00899 * 110.99750 * 200.27337 * 6 5 3 26 26 H 1.09002 * 109.91541 * 265.97907 * 7 6 5 27 27 H 1.08997 * 109.91844 * 144.68470 * 7 6 5 28 28 H 0.97001 * 120.00295 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5739 2.0149 -0.8021 5 6 1.7892 2.1127 1.3743 6 7 2.8153 3.1855 1.4215 7 6 4.0355 2.6031 0.8221 8 6 3.5803 1.4783 -0.1260 9 1 4.0074 0.5244 0.1837 10 6 3.9820 1.7945 -1.5436 11 1 3.2244 1.9575 -2.2960 12 6 5.3166 1.8758 -1.8802 13 7 6.2390 1.6770 -0.9642 14 14 5.8144 2.2685 -3.6373 15 1 5.9396 3.7394 -3.7993 16 1 7.1183 1.6247 -3.9380 17 1 4.7811 1.7539 -4.5714 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8933 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 0.7863 2.5374 1.4178 24 1 1.9412 1.3990 2.1838 25 1 2.9849 3.4821 2.3709 26 1 4.6744 2.1934 1.6045 27 1 4.5743 3.3665 0.2608 28 1 7.1780 1.7338 -1.2010 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260987616.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:55 Heat of formation + Delta-G solvation = -38.814504 kcal Electronic energy + Delta-G solvation = -10048.923858 eV Core-core repulsion = 8290.966577 eV Total energy + Delta-G solvation = -1757.957281 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.56421 -34.80459 -34.36555 -30.71118 -28.55593 -26.32403 -23.79524 -21.80594 -20.63019 -18.37924 -17.06544 -16.60373 -15.88249 -15.08151 -14.34947 -14.10541 -13.79842 -13.45231 -13.20752 -13.04377 -12.68515 -12.38629 -12.25301 -12.07844 -11.53999 -11.24769 -10.93452 -10.78014 -10.54640 -9.29172 -8.14598 -6.23345 1.40315 1.41241 1.51356 2.42953 3.16773 3.57780 4.03700 4.18215 4.35313 4.53089 4.60818 4.69640 4.73769 4.95971 5.02154 5.21134 5.23075 5.25379 5.44596 5.50983 5.62060 5.74706 5.82851 6.13022 6.39084 6.66771 6.87965 7.43771 8.95144 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.052370 B = 0.015839 C = 0.013395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.525702 B = 1767.400659 C = 2089.836397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.084 4.084 4 H 0.057 0.943 5 C 0.049 3.951 6 N -0.683 5.683 7 C 0.078 3.922 8 C 0.036 3.964 9 H 0.001 0.999 10 C -0.522 4.522 11 H 0.051 0.949 12 C 0.009 3.991 13 N -0.923 5.923 14 Si 0.955 3.045 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.267 1.267 18 H 0.063 0.937 19 H 0.051 0.949 20 H 0.064 0.936 21 H 0.045 0.955 22 H 0.055 0.945 23 H 0.090 0.910 24 H 0.041 0.959 25 H 0.334 0.666 26 H 0.003 0.997 27 H 0.042 0.958 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.097 -1.261 2.915 8.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C -0.103 4.103 4 H 0.076 0.924 5 C -0.079 4.079 6 N -0.312 5.312 7 C -0.052 4.052 8 C 0.017 3.983 9 H 0.019 0.981 10 C -0.561 4.561 11 H 0.069 0.931 12 C -0.189 4.189 13 N -0.562 5.562 14 Si 0.780 3.220 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.192 1.192 18 H 0.082 0.918 19 H 0.070 0.930 20 H 0.083 0.917 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.108 0.892 24 H 0.060 0.940 25 H 0.150 0.850 26 H 0.021 0.979 27 H 0.060 0.940 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.129 -0.883 2.352 8.508 hybrid contribution 1.241 -0.388 -0.147 1.309 sum -6.888 -1.272 2.205 7.343 Atomic orbital electron populations 1.21727 0.93941 1.02038 1.02048 1.21425 0.97001 0.95195 1.00895 1.22154 0.95941 0.95882 0.96330 0.92402 1.23071 0.96239 0.92357 0.96270 1.63066 1.08396 1.36306 1.23444 1.22408 0.90229 0.97128 0.95409 1.19530 0.91762 0.92759 0.94212 0.98071 1.21494 0.91827 1.47454 0.95298 0.93088 1.25786 0.96807 0.95192 1.01140 1.70081 1.00542 1.50747 1.34870 0.85603 0.77603 0.78321 0.80448 1.20227 1.20787 1.19186 0.91781 0.93030 0.91691 0.93596 0.92642 0.89177 0.94023 0.85048 0.97853 0.93987 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.80 71.98 0.71 -3.02 15 2 C -0.11 -3.76 5.31 30.60 0.16 -3.60 15 3 C -0.08 -3.49 2.57 -9.58 -0.02 -3.52 15 4 H 0.06 2.55 7.68 -2.39 -0.02 2.53 15 5 C 0.05 1.76 6.40 86.65 0.55 2.32 15 6 N -0.68 -27.71 7.51 -502.23 -3.77 -31.48 15 7 C 0.08 3.88 6.42 86.45 0.55 4.44 15 8 C 0.04 1.89 2.45 -10.66 -0.03 1.86 15 9 H 0.00 0.07 7.85 -2.38 -0.02 0.05 15 10 C -0.52 -29.77 8.33 25.60 0.21 -29.55 15 11 H 0.05 2.88 7.54 -2.91 -0.02 2.86 15 12 C 0.01 0.52 5.12 84.66 0.43 0.95 15 13 N -0.92 -54.92 12.55 21.45 0.27 -54.65 15 14 Si 0.95 44.80 29.54 68.60 2.03 46.82 15 15 H -0.28 -12.72 7.11 99.48 0.71 -12.02 15 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 15 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 18 H 0.06 1.51 7.66 -2.38 -0.02 1.50 15 19 H 0.05 1.37 8.14 -2.39 -0.02 1.35 15 20 H 0.06 1.47 8.14 -2.39 -0.02 1.45 15 21 H 0.05 1.75 8.14 -2.39 -0.02 1.73 15 22 H 0.05 1.88 7.99 -2.39 -0.02 1.86 15 23 H 0.09 2.75 8.12 -2.39 -0.02 2.73 15 24 H 0.04 1.37 7.94 -2.39 -0.02 1.36 15 25 H 0.33 11.51 8.92 -89.69 -0.80 10.71 15 26 H 0.00 0.16 8.14 -2.39 -0.02 0.14 15 27 H 0.04 2.37 7.32 -2.39 -0.02 2.36 15 28 H 0.26 14.74 8.31 -92.71 -0.77 13.97 15 Total: -1.00 -61.92 229.21 1.42 -60.50 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.32 Total: 8.92 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 2.57 Total: -30.11 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -3.50 Total: -86.13 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -61.92 1.42 -60.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260987616.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.684 kcal (2) G-P(sol) polarization free energy of solvation -61.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds