Wall clock time and date at job start Mon Mar 30 2020 01:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47304 * 2 1 4 4 C 1.50702 * 109.46770 * 119.99869 * 2 1 3 5 5 H 1.07999 * 120.00579 * 114.36311 * 4 2 1 6 6 C 1.37884 * 120.00004 * 294.35635 * 4 2 1 7 7 N 1.31507 * 120.00121 * 156.92834 * 6 4 2 8 8 Si 1.86804 * 119.99897 * 336.93031 * 6 4 2 9 9 H 1.48500 * 109.46800 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.47092 * 299.99702 * 8 6 4 11 11 H 1.48501 * 109.46890 * 59.99838 * 8 6 4 12 12 N 1.46494 * 109.47236 * 239.99262 * 2 1 3 13 13 C 1.45726 * 133.17382 * 119.64745 * 12 2 1 14 14 C 1.52369 * 87.95835 * 180.02562 * 13 12 2 15 15 C 1.33839 * 133.17962 * 300.00896 * 12 2 1 16 16 O 1.21280 * 133.23982 * 359.95436 * 15 12 2 17 17 H 1.09000 * 109.47197 * 293.20743 * 1 2 3 18 18 H 1.09003 * 109.46709 * 53.20217 * 1 2 3 19 19 H 1.08994 * 109.47440 * 173.20536 * 1 2 3 20 20 H 0.97006 * 119.99957 * 354.92892 * 7 6 4 21 21 H 1.09002 * 113.47522 * 294.81082 * 13 12 2 22 22 H 1.08997 * 113.47363 * 65.26880 * 13 12 2 23 23 H 1.08993 * 114.15932 * 246.19079 * 14 13 12 24 24 H 1.08997 * 113.77034 * 114.16251 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5760 -1.6385 1.1342 6 6 1.7977 -0.1754 2.4795 7 7 1.8087 -0.9524 3.5404 8 14 1.4644 1.6534 2.6646 9 1 1.2447 1.9738 4.0979 10 1 2.6291 2.4226 2.1578 11 1 0.2538 2.0172 1.8853 12 7 2.0184 -0.6907 -1.1960 13 6 2.8464 -0.2734 -2.3202 14 6 2.6993 -1.6824 -2.8813 15 6 1.8635 -1.9358 -1.6620 16 8 1.2680 -2.9089 -1.2503 17 1 -0.3633 0.4050 0.9445 18 1 -0.3633 0.6156 -0.8229 19 1 -0.3634 -1.0204 -0.1216 20 1 1.9083 -1.9119 3.4378 21 1 2.3814 0.4922 -2.9414 22 1 3.8689 -0.0237 -2.0372 23 1 3.6285 -2.2513 -2.9075 24 1 2.1419 -1.7267 -3.8169 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261090391.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:09 Heat of formation + Delta-G solvation = -7.448300 kcal Electronic energy + Delta-G solvation = -9819.611823 eV Core-core repulsion = 7927.181589 eV Total energy + Delta-G solvation = -1892.430235 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.16316 -35.74703 -34.00868 -31.33821 -27.19358 -24.76063 -24.03945 -21.19227 -17.84513 -17.17957 -16.15082 -15.92454 -15.23531 -13.74463 -13.22218 -12.58818 -12.51276 -12.19220 -11.73709 -11.59966 -11.25075 -11.09063 -10.53493 -10.25430 -9.86232 -9.20725 -8.97694 -8.30331 -7.86366 -6.49963 -4.11189 3.32052 3.33987 3.36965 3.54296 3.91996 4.44225 4.56565 5.10739 5.16974 5.26945 5.68219 5.84783 6.18681 6.23409 6.46360 6.58360 6.71738 7.13236 7.55967 7.66643 8.05567 8.36343 8.83300 9.11534 9.56350 10.84908 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.063561 B = 0.016899 C = 0.015449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.417427 B = 1656.470634 C = 1811.923831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.256 3.744 3 H 0.038 0.962 4 C -0.616 4.616 5 H 0.060 0.940 6 C 0.038 3.962 7 N -0.892 5.892 8 Si 1.036 2.964 9 H -0.281 1.281 10 H -0.282 1.282 11 H -0.276 1.276 12 N -0.600 5.600 13 C 0.096 3.904 14 C -0.186 4.186 15 C 0.516 3.484 16 O -0.527 6.527 17 H 0.062 0.938 18 H 0.025 0.975 19 H 0.052 0.948 20 H 0.272 0.728 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.106 0.894 24 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.504 4.730 -10.890 11.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.156 3.844 3 H 0.056 0.944 4 C -0.654 4.654 5 H 0.079 0.921 6 C -0.169 4.169 7 N -0.524 5.524 8 Si 0.863 3.137 9 H -0.207 1.207 10 H -0.208 1.208 11 H -0.202 1.202 12 N -0.334 5.334 13 C -0.028 4.028 14 C -0.227 4.227 15 C 0.301 3.699 16 O -0.403 6.403 17 H 0.081 0.919 18 H 0.044 0.956 19 H 0.071 0.929 20 H 0.082 0.918 21 H 0.094 0.906 22 H 0.098 0.902 23 H 0.125 0.875 24 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.846 5.512 -9.317 10.858 hybrid contribution 0.346 -1.138 -1.081 1.607 sum 1.192 4.374 -10.397 11.343 Atomic orbital electron populations 1.22451 0.98419 1.00904 0.99884 1.19040 0.90592 0.92492 0.82323 0.94430 1.22147 1.41252 1.11163 0.90792 0.92142 1.25709 0.93416 1.05924 0.91828 1.70806 1.43149 1.06656 1.31798 0.84164 0.77175 0.75726 0.76596 1.20690 1.20789 1.20197 1.50249 1.49106 1.12151 1.21901 1.22311 0.96650 0.96559 0.87245 1.23446 1.02183 0.97258 0.99773 1.21174 0.80660 0.82956 0.85091 1.90648 1.46260 1.33980 1.69445 0.91881 0.95626 0.92907 0.91813 0.90562 0.90232 0.87548 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 9.13 37.16 0.34 -3.35 14 2 C 0.26 6.27 2.98 -69.08 -0.21 6.06 14 3 H 0.04 0.87 6.72 -51.93 -0.35 0.52 14 4 C -0.62 -17.97 8.91 -34.44 -0.31 -18.27 14 5 H 0.06 1.98 8.06 -52.49 -0.42 1.56 14 6 C 0.04 1.11 5.20 -17.82 -0.09 1.02 14 7 N -0.89 -27.80 13.69 55.43 0.76 -27.04 14 8 Si 1.04 24.50 26.44 -169.99 -4.49 20.00 14 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 14 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 14 11 H -0.28 -6.00 6.14 56.52 0.35 -5.65 14 12 N -0.60 -12.94 3.03 -184.28 -0.56 -13.49 14 13 C 0.10 1.43 8.98 -9.93 -0.09 1.35 14 14 C -0.19 -2.67 8.33 -28.57 -0.24 -2.91 14 15 C 0.52 11.28 8.98 -16.90 -0.15 11.13 14 16 O -0.53 -13.93 18.03 5.56 0.10 -13.83 14 17 H 0.06 1.49 5.47 -51.93 -0.28 1.20 14 18 H 0.02 0.50 8.14 -51.93 -0.42 0.08 14 19 H 0.05 1.32 8.05 -51.93 -0.42 0.90 14 20 H 0.27 8.60 8.73 -40.82 -0.36 8.25 14 21 H 0.08 0.93 8.14 -51.93 -0.42 0.51 14 22 H 0.08 1.09 8.14 -51.93 -0.42 0.66 14 23 H 0.11 1.33 8.14 -51.93 -0.42 0.91 14 24 H 0.10 1.21 8.14 -51.93 -0.42 0.78 14 LS Contribution 211.77 15.07 3.19 3.19 Total: -1.00 -34.03 211.77 -4.54 -38.57 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: -2.79 Total: -2.42 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -0.74 Total: -4.98 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.20 Total: -40.53 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.10 Total: -13.83 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -4.49 Total: 20.00 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -34.03 -4.54 -38.57 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261090391.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.120 kcal (2) G-P(sol) polarization free energy of solvation -34.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds