Wall clock time and date at job start Mon Mar 30 2020 02:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46908 * 111.00010 * 2 1 4 4 C 1.52999 * 109.46906 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.46975 * 59.99747 * 3 2 1 6 6 H 1.07994 * 120.00306 * 240.00001 * 5 3 2 7 7 C 1.37885 * 120.00063 * 60.00682 * 5 3 2 8 8 N 1.31514 * 119.99957 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99990 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.46728 * 90.00178 * 9 7 5 11 11 H 1.48496 * 109.47203 * 210.00575 * 9 7 5 12 12 H 1.48503 * 109.46850 * 330.00593 * 9 7 5 13 13 C 1.52996 * 109.46761 * 299.99901 * 3 2 1 14 14 C 1.53002 * 117.49888 * 226.25355 * 13 3 2 15 15 C 1.53000 * 117.50107 * 294.91117 * 13 3 2 16 16 H 1.09002 * 109.47178 * 300.00245 * 1 2 3 17 17 H 1.08994 * 109.46878 * 60.00017 * 1 2 3 18 18 H 1.08996 * 109.46729 * 180.02562 * 1 2 3 19 19 H 1.00898 * 111.00565 * 236.04418 * 2 1 3 20 20 H 1.08998 * 109.46785 * 179.97438 * 4 3 2 21 21 H 1.08998 * 109.47181 * 299.99538 * 4 3 2 22 22 H 1.09000 * 109.47372 * 60.00409 * 4 3 2 23 23 H 0.96997 * 120.00148 * 179.97438 * 8 7 5 24 24 H 1.09002 * 115.54951 * 80.58328 * 13 3 2 25 25 H 1.09000 * 117.49996 * 215.00804 * 14 13 3 26 26 H 1.08999 * 117.49664 * 0.02562 * 14 13 3 27 27 H 1.09008 * 117.49673 * 359.97438 * 15 13 3 28 28 H 1.08999 * 117.49959 * 144.99502 * 15 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5249 1.3306 0.0006 5 6 1.5122 2.0950 1.2304 6 1 0.9149 2.9893 1.1314 7 6 1.8326 1.6153 2.4828 8 7 1.4113 2.2470 3.5565 9 14 2.8653 0.0681 2.6542 10 1 4.3034 0.4354 2.6994 11 1 2.4950 -0.6378 3.9071 12 1 2.6182 -0.8231 1.4923 13 6 1.5048 2.1060 -1.2492 14 6 2.5341 2.9108 -2.0454 15 6 1.9914 1.5941 -2.6065 16 1 -0.3633 0.5139 0.8900 17 1 -0.3633 0.5138 -0.8899 18 1 -0.3632 -1.0276 0.0005 19 1 1.8306 -0.5261 -0.7813 20 1 3.9155 2.3482 0.0002 21 1 3.8740 0.8075 0.8909 22 1 3.8748 0.8072 -0.8891 23 1 1.6364 1.9094 4.4375 24 1 0.4903 2.5008 -1.1945 25 1 2.1967 3.8352 -2.5144 26 1 3.5607 2.9167 -1.6794 27 1 2.6614 0.7343 -2.6094 28 1 1.2969 1.6521 -3.4447 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261157218.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:01 Heat of formation + Delta-G solvation = 41.294858 kcal Electronic energy + Delta-G solvation = -10416.873367 eV Core-core repulsion = 8662.389889 eV Total energy + Delta-G solvation = -1754.483478 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.33123 -34.08137 -31.94968 -29.53516 -25.27897 -23.87093 -22.49650 -21.73348 -18.15471 -16.18763 -15.92886 -14.32310 -14.10583 -13.89337 -13.14030 -12.38521 -12.19480 -11.85114 -11.51306 -10.84684 -10.62038 -10.51990 -10.37119 -10.01758 -9.61885 -9.49773 -9.22816 -8.87839 -8.42437 -6.89134 -5.94851 -4.01266 3.52186 3.65806 3.94691 4.47018 4.73998 5.26650 5.40135 5.57606 5.68625 5.76423 6.00432 6.13003 6.32310 6.36472 6.44572 6.49971 6.63339 6.64449 6.84077 6.94667 7.05212 7.34004 7.73676 8.09868 8.48707 8.75146 9.05594 9.71389 11.15425 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.053044 B = 0.020976 C = 0.020307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.740580 B = 1334.514134 C = 1378.527096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.675 5.675 3 C 0.231 3.769 4 C -0.140 4.140 5 C -0.506 4.506 6 H 0.068 0.932 7 C 0.082 3.918 8 N -0.904 5.904 9 Si 0.874 3.126 10 H -0.300 1.300 11 H -0.315 1.315 12 H -0.194 1.194 13 C -0.139 4.139 14 C -0.183 4.183 15 C -0.200 4.200 16 H 0.078 0.922 17 H 0.007 0.993 18 H 0.038 0.962 19 H 0.306 0.694 20 H 0.058 0.942 21 H 0.049 0.951 22 H 0.028 0.972 23 H 0.261 0.739 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.610 -3.312 -9.020 9.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.304 5.304 3 C 0.142 3.858 4 C -0.198 4.198 5 C -0.544 4.544 6 H 0.087 0.913 7 C -0.121 4.121 8 N -0.541 5.541 9 Si 0.705 3.295 10 H -0.229 1.229 11 H -0.244 1.244 12 H -0.116 1.116 13 C -0.159 4.159 14 C -0.220 4.220 15 C -0.237 4.237 16 H 0.096 0.904 17 H 0.026 0.974 18 H 0.057 0.943 19 H 0.122 0.878 20 H 0.077 0.923 21 H 0.068 0.932 22 H 0.047 0.953 23 H 0.071 0.929 24 H 0.110 0.890 25 H 0.098 0.902 26 H 0.115 0.885 27 H 0.104 0.896 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.626 -3.394 -8.156 8.982 hybrid contribution 0.298 -0.267 -0.634 0.750 sum 1.924 -3.661 -8.790 9.715 Atomic orbital electron populations 1.21934 0.89285 0.98707 1.00884 1.61575 1.07225 1.15782 1.45795 1.18557 0.90743 0.84587 0.91936 1.22202 0.97870 1.00628 0.99057 1.20655 1.34726 1.10903 0.88103 0.91340 1.24989 0.94958 0.96836 0.95331 1.69955 1.45777 1.40323 0.98016 0.87289 0.77915 0.85988 0.78330 1.22910 1.24423 1.11614 1.23108 0.98416 1.02159 0.92229 1.22974 1.00247 0.94062 1.04744 1.22897 1.04553 0.98076 0.98165 0.90370 0.97431 0.94334 0.87783 0.92343 0.93244 0.95342 0.92945 0.88961 0.90191 0.88484 0.89553 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 10.12 60.06 0.61 1.45 15 2 N -0.67 -14.38 3.09 -108.37 -0.33 -14.71 15 3 C 0.23 5.22 0.39 -132.75 -0.05 5.16 15 4 C -0.14 -3.01 6.92 37.16 0.26 -2.75 15 5 C -0.51 -14.01 7.28 -34.44 -0.25 -14.26 15 6 H 0.07 2.09 7.99 -52.49 -0.42 1.67 15 7 C 0.08 2.38 5.45 -17.82 -0.10 2.28 15 8 N -0.90 -28.10 13.96 55.43 0.77 -27.32 15 9 Si 0.87 22.33 23.86 -169.99 -4.06 18.28 15 10 H -0.30 -7.70 6.87 56.52 0.39 -7.31 15 11 H -0.31 -8.36 7.11 56.52 0.40 -7.96 15 12 H -0.19 -4.59 5.16 56.52 0.29 -4.30 15 13 C -0.14 -2.76 3.89 -90.62 -0.35 -3.12 15 14 C -0.18 -3.18 9.66 -26.69 -0.26 -3.43 15 15 C -0.20 -3.27 9.57 -26.70 -0.26 -3.53 15 16 H 0.08 1.81 7.09 -51.93 -0.37 1.45 15 17 H 0.01 0.14 6.87 -51.93 -0.36 -0.22 15 18 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 19 H 0.31 5.80 8.41 -39.29 -0.33 5.47 15 20 H 0.06 1.24 6.74 -51.93 -0.35 0.89 15 21 H 0.05 1.14 3.27 -51.93 -0.17 0.97 15 22 H 0.03 0.52 6.96 -51.93 -0.36 0.16 15 23 H 0.26 7.74 8.31 -40.82 -0.34 7.40 15 24 H 0.09 1.93 7.80 -51.93 -0.41 1.53 15 25 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 26 H 0.10 1.68 5.89 -51.93 -0.31 1.37 15 27 H 0.09 1.36 7.19 -51.92 -0.37 0.99 15 28 H 0.08 1.18 8.14 -51.93 -0.42 0.75 15 LS Contribution 214.25 15.07 3.23 3.23 Total: -1.00 -30.00 214.25 -4.75 -34.75 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -3.97 Total: 3.98 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -0.40 Total: -18.20 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.44 Total: -42.04 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.06 Total: 18.28 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -30.00 -4.75 -34.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157218.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.048 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds